New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1892452	88 (0.860)	4 (0.040)	3/278	8.6	4.6%	coding (200/225 nt)	USA300TCH1516_01749	hypothetical protein
	?	USA300TCH1516_ALE	= 1892462	83 (0.860)					coding (190/225 nt)	USA300TCH1516_01749	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATTTAACAAATTAAATCAAACCGAATGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATCTTCTTTTATCTC  >  USA300TCH1516_ALE/1892304‑1892594                                                                                                                                                     |                                                                                                                                               aaTTTAACAAATTAAATCAAACCGAATGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAg                                                                                                                                                <  1:897416/149‑1 (MQ=255)    ttAACAAAATAAAACAAAACGAATGAAGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATAGACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCAt                                                                                                                                             <  2:602485/149‑1 (MQ=255)     tAACAAATTAAATCAAACCGAATGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATc                                                                                                                                            <  1:256196/149‑1 (MQ=255)      aaCAAATTAAATCAAACCGAATGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACTTTAAAATAGTTCTAAAAAAAGATGTGCATCt                                                                                                                                           >  1:440005/1‑149 (MQ=255)         aaaTTAAATCAAACCGAATGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAGCATTTCTTACAAATCACATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAAATAAGCATCTACt                                                                                                                                        >  2:528247/1‑149 (MQ=255)         aaaTAAAATCAAACCGAATGAGCCTGAATTGGTTATTTTTCAAAATATGATTTGTATAAATCAAAACACTTCATACAAATCAAATGTGTATAAAATTTGATATACATTATAAACAAAAAAAAAGTTCTAAAAAAAGATGAGCATCTACt                                                                                                                                        <  2:839507/149‑1 (MQ=255)            ttAAATCAAACCGAATGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGtc                                                                                                                                     >  2:115434/1‑149 (MQ=255)               aaTCAAACCGAATGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCa                                                                                                                                  >  2:320226/1‑149 (MQ=255)               aaTCAAACCGAATGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCa                                                                                                                                  >  2:576336/1‑149 (MQ=255)               aaTCAAACCGAATGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGAATCTACTGTCGCa                                                                                                                                  >  1:201246/1‑149 (MQ=255)                aTCAAACCGAATGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCAt                                                                                                                                 >  1:239787/1‑149 (MQ=255)                  cAAACCGAATGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCt                                                                                                                               >  2:192261/1‑149 (MQ=255)                          aTGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACAGTCTCATCTTTCAGTTc                                                                                                                       <  2:718244/149‑1 (MQ=255)                           tGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCCTCTACTGTCTCATCTTTCAGTTCt                                                                                                                      >  2:396227/1‑149 (MQ=255)                           tGAAGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCt                                                                                                                      <  2:469031/149‑1 (MQ=255)                                 tAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAATTCTTTTTTa                                                                                                                >  2:524284/1‑149 (MQ=255)                                  aaaTTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTAc                                                                                                               <  1:825189/149‑1 (MQ=255)                                     ttGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACggg                                                                                                            <  2:107341/149‑1 (MQ=255)                                         ttATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAACATCTACTGTCTCATTTTTCAGTTCTTTTTTAAGGTTcat                                                                                                        >  1:835411/1‑147 (MQ=255)                                              tttCAAGGTATGATTTGTATAGATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGGGCATCTACTGTCTCATCTTTCAGTTCTTTTTTATGGGTCTGTTTTc                                                                                                   <  2:159245/149‑1 (MQ=255)                                              tttCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTc                                                                                                   >  2:1104321/1‑149 (MQ=255)                                              tttCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTc                                                                                                   <  2:139758/149‑1 (MQ=255)                                              tttCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTc                                                                                                   <  1:887990/149‑1 (MQ=255)                                               ttCCAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCt                                                                                                  <  2:1106323/149‑1 (MQ=255)                                                   aGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAAtt                                                                                              <  1:378242/149‑1 (MQ=255)                                                     atatGATTTGTATAAATCAAAACATTTCATACAAATCAAATGTTTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTg                                                                                            <  1:205663/149‑1 (MQ=255)                                                       atGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAg                                                                                          <  1:1002958/149‑1 (MQ=255)                                                       atGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAg                                                                                          <  1:79795/149‑1 (MQ=255)                                                          aTTTGTATAAATCAAAACATTTCTTACAAATCAACTGTGAATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTGTAATTTGAGcaa                                                                                       >  2:291118/1‑148 (MQ=255)                                                            ttttataAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACaa                                                                                     <  1:497325/146‑1 (MQ=255)                                                                     tccaaaCATTTCTTACAAATCAAATGTGTATAAAATGAGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAAATGAGCATCTACTGTCTTATATTTTTGTTCTTTTTTACGGGTCTCTTTTCTAATTTGAGCACCATCTTCGAtt                                                                            >  2:117704/4‑149 (MQ=255)                                                                     tCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACACTCTTCGAtt                                                                            >  2:618784/1‑149 (MQ=255)                                                                      cAAAACATTTCTTAAAAATACTATCTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGAttt                                                                           <  1:750695/149‑1 (MQ=39)                                                                       aaaaCATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGAtttt                                                                          >  1:987987/1‑148 (MQ=255)                                                                       aaaaCATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTc                                                                          <  2:432237/149‑1 (MQ=255)                                                                       aaaaCATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTc                                                                          <  2:536267/149‑1 (MQ=255)                                                                        aaaCATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTTTGTTTTTTTATTTGTGCATAATCTTCGATTTCt                                                                         >  1:1035163/1‑149 (MQ=255)                                                                           cATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTa                                                                      <  1:74072/149‑1 (MQ=255)                                                                           aaTTCCTTACAAATCCAATGTGAAGAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTa                                                                      <  1:904414/148‑1 (MQ=255)                                                                                cTTACAAACCAAATGTGAATAAAATTGGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTAAGGGTCTGTCTTCTAATTTGAGCACAATCTTCGATTTCTTTATCtca                                                                 <  2:268904/149‑3 (MQ=39)                                                                                 ttAAAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTaaa                                                                <  2:1066161/149‑1 (MQ=255)                                                                                  tACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAAt                                                               >  1:861623/1‑149 (MQ=255)                                                                                    caaatcaaatGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTTTTTTTTACGTGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGa                                                             >  1:864244/1‑149 (MQ=255)                                                                                       atcaaatTTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTa                                                          <  2:1014930/149‑1 (MQ=255)                                                                                       atcaaatGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTa                                                          >  1:123565/1‑149 (MQ=255)                                                                                       atcaaatGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTa                                                          <  1:1034124/149‑1 (MQ=255)                                                                                       atcaaatGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATATACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTACTTTGAGCACAATCTTCGATTTCTTTATCTAAATGACtt                                                          >  1:317973/1‑148 (MQ=255)                                                                                           aatGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCaa                                                      >  1:475743/1‑149 (MQ=255)                                                                                            atGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAAt                                                     <  2:416276/149‑1 (MQ=255)                                                                                            atGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAAt                                                     <  1:284684/149‑1 (MQ=255)                                                                                            atGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAAt                                                     <  2:226947/149‑1 (MQ=255)                                                                                                  ataAAATTCGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATc                                               <  1:6102/149‑1 (MQ=255)                                                                                                  ataAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATc                                               <  2:181667/149‑1 (MQ=255)                                                                                                  ataAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCCCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTACCTAAATGACTACCAATTAAATc                                               <  2:765134/149‑1 (MQ=255)                                                                                                  ataAAATGTGAAATACATTTTCAACCTTGAAAAATTGCTTAAAAGAGATGGGCATCTTCTTTCTCATCTTTCAGTTCTGTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCGAAATGACTACCATGTAAATc                                               <  2:49645/149‑1 (MQ=37)                                                                                                    aaaaTGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTa                                             <  1:426546/149‑1 (MQ=255)                                                                                                    aaaaTGTAATTTACATTTTCAATCTTAAAAAAGTTCTAAAAAAAGATGATCATGTACTGTCTCATCTTTCAGTTTTTTTTTACGGGTCTGTTTTATAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTa                                             <  1:179568/149‑1 (MQ=38)                                                                                                      aaTGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATATTCGATTTCTTTATCTAAATGACTACCCATTAAATCtttt                                           >  2:84826/1‑149 (MQ=255)                                                                                                         gtgATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGGTTTCTTTATCTAAATGACTACCAATTAAATCTGTttct                                        >  1:233606/1‑149 (MQ=255)                                                                                                          tgATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGTTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATttctt                                       <  2:483042/149‑1 (MQ=255)                                                                                                          tcatatACCTTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTTCTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATttctt                                       <  1:495228/147‑1 (MQ=255)                                                                                                             tataCATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAACTATCTGTCTTCTa                                    <  2:291355/149‑1 (MQ=255)                                                                                                                aCATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTAttt                                 >  2:405155/1‑148 (MQ=255)                                                                                                                aCATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTg                                 >  2:1094988/1‑149 (MQ=255)                                                                                                                aCATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATATACTGGGGGATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGTCTACCAATTAAATCTATTTCTTCTATTg                                 >  1:774770/1‑149 (MQ=38)                                                                                                                 cATTTTCAACCTTAAAAAAGTTCTAACACACGCCTAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTCtttt                                >  2:516331/1‑147 (MQ=37)                                                                                                                 cATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTTAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCCATTTCTTCTATTGt                                >  1:357764/1‑149 (MQ=255)                                                                                                                 cATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAACTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTCCCAATTAAATCTATTTCTTCTAtttt                                >  1:853393/1‑147 (MQ=255)                                                                                                                 cATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCAGCTTTCAGTGCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATatcttcatttct                                >  2:33075/1‑143 (MQ=38)                                                                                                                 cATTTTCAACCTTAAAAAAGTTCTAAAAAAAGAGGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGt                                <  1:638327/149‑1 (MQ=255)                                                                                                                       cAACCTTAAAAAAGTTCTAAAAAAATATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATc                          <  1:1025333/149‑1 (MQ=255)                                                                                                                        aaCCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTATATTTATAAATCg                         >  2:416301/1‑149 (MQ=255)                                                                                                                        aaCCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTAAGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATTTAATTTACTTATATTTACATTTATTTTTTTTTTTGTTAAAtat                         >  2:312220/1‑147 (MQ=37)                                                                                                                            ttAAAAAAGTTCTAAAAAAAAATGAGCATCTACTGACCCATCTTGCAGTTCTTTTTTACGGGTCTTTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACAAACTAAATCTATTTCCTCTATATTAAAATCGCTAt                     >  2:465970/1‑149 (MQ=25)                                                                                                                              aaaaaaGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTAtct                   <  1:115434/149‑1 (MQ=255)                                                                                                                                aaaaGTTCTAAAGAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTCTCTcc                 >  2:676468/1‑149 (MQ=255)                                                                                                                                aaaaGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTATATCGCTATCTcc                 >  2:774543/1‑149 (MQ=255)                                                                                                                                 aaaGTTCTAAAAAAAGATGAGCATGTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTAGGCACAATCTTCGATTTCTTTATCTAAATGACTGCCAATTAAATCTATTTTTTCTTTTTTTAAATCGCttgttcca                >  1:381082/1‑142 (MQ=37)                                                                                                                                 aaaGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTccc                >  2:331553/1‑148 (MQ=255)                                                                                                                                    gTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCAtct             <  2:1095999/149‑1 (MQ=255)                                                                                                                                     ttCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCAtctt            <  1:199026/149‑1 (MQ=255)                                                                                                                                      tCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATTACTACCAATTAAATCTATTTTTTTTATTGTTAAATCTCTATCTCcttcttt           >  1:530989/1‑148 (MQ=37)                                                                                                                                        tAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATcttctt         <  2:522427/149‑1 (MQ=255)                                                                                                                                        tAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATcttctt         <  2:131012/149‑1 (MQ=255)                                                                                                                                        tAAAAAAAGAAGAGCATTTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATcttctt         <  2:945587/149‑1 (MQ=255)                                                                                                                                        caaaaaaaGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATcttctt         <  2:827667/148‑1 (MQ=255)                                                                                                                                             aaaGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATCTTCTTTTAtt    >  1:909086/1‑148 (MQ=255)                                                                                                                                             aaaGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGACTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTGCCATTTTAATTTTTTTATACCATAACCAAATCGCTATCTCCATCTTCTTTTAtt    >  1:979527/1‑148 (MQ=25)                                                                                                                                               aggtgcgCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATCTTCTTTTAtctc  <  2:663262/143‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               AATTTAACAAATTAAATCAAACCGAATGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATCTTCTTTTATCTC  >  USA300TCH1516_ALE/1892304‑1892594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.