New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1892452	88 (0.860)	4 (0.040)	3/278	8.6	4.6%	coding (200/225 nt)	USA300TCH1516_01749	hypothetical protein
	?	USA300TCH1516_ALE	= 1892462	83 (0.860)					coding (190/225 nt)	USA300TCH1516_01749	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTAAATCAAACCGAATGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATCTTCTTTTATCTCTGGTATTATTTTTT  >  USA300TCH1516_ALE/1892315‑1892608                                                                                                                                                    |                                                                                                                                                   ttAAATCAAACCGAATGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGtc                                                                                                                                                   >  2:115434/1‑149 (MQ=255)    aaTCAAACCGAATGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCa                                                                                                                                                >  2:320226/1‑149 (MQ=255)    aaTCAAACCGAATGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCa                                                                                                                                                >  2:576336/1‑149 (MQ=255)    aaTCAAACCGAATGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGAATCTACTGTCGCa                                                                                                                                                >  1:201246/1‑149 (MQ=255)     aTCAAACCGAATGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCAt                                                                                                                                               >  1:239787/1‑149 (MQ=255)       cAAACCGAATGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCt                                                                                                                                             >  2:192261/1‑149 (MQ=255)               aTGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACAGTCTCATCTTTCAGTTc                                                                                                                                     <  2:718244/149‑1 (MQ=255)                tGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCCTCTACTGTCTCATCTTTCAGTTCt                                                                                                                                    >  2:396227/1‑149 (MQ=255)                tGAAGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCt                                                                                                                                    <  2:469031/149‑1 (MQ=255)                      tAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAATTCTTTTTTa                                                                                                                              >  2:524284/1‑149 (MQ=255)                       aaaTTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTAc                                                                                                                             <  1:825189/149‑1 (MQ=255)                          ttGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACggg                                                                                                                          <  2:107341/149‑1 (MQ=255)                              ttATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAACATCTACTGTCTCATTTTTCAGTTCTTTTTTAAGGTTcat                                                                                                                      >  1:835411/1‑147 (MQ=255)                                   tttCAAGGTATGATTTGTATAGATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGGGCATCTACTGTCTCATCTTTCAGTTCTTTTTTATGGGTCTGTTTTc                                                                                                                 <  2:159245/149‑1 (MQ=255)                                   tttCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTc                                                                                                                 >  2:1104321/1‑149 (MQ=255)                                   tttCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTc                                                                                                                 <  1:887990/149‑1 (MQ=255)                                   tttCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTc                                                                                                                 <  2:139758/149‑1 (MQ=255)                                    ttCCAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCt                                                                                                                <  2:1106323/149‑1 (MQ=255)                                        aGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAAtt                                                                                                            <  1:378242/149‑1 (MQ=255)                                          atatGATTTGTATAAATCAAAACATTTCATACAAATCAAATGTTTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTg                                                                                                          <  1:205663/149‑1 (MQ=255)                                            atGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAg                                                                                                        <  1:79795/149‑1 (MQ=255)                                            atGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAg                                                                                                        <  1:1002958/149‑1 (MQ=255)                                               aTTTGTATAAATCAAAACATTTCTTACAAATCAACTGTGAATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTGTAATTTGAGcaa                                                                                                     >  2:291118/1‑148 (MQ=255)                                                 ttttataAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACaa                                                                                                   <  1:497325/146‑1 (MQ=255)                                                          tccaaaCATTTCTTACAAATCAAATGTGTATAAAATGAGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAAATGAGCATCTACTGTCTTATATTTTTGTTCTTTTTTACGGGTCTCTTTTCTAATTTGAGCACCATCTTCGAtt                                                                                          >  2:117704/4‑149 (MQ=255)                                                          tCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACACTCTTCGAtt                                                                                          >  2:618784/1‑149 (MQ=255)                                                           cAAAACATTTCTTAAAAATACTATCTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGAttt                                                                                         <  1:750695/149‑1 (MQ=39)                                                            aaaaCATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGAtttt                                                                                        >  1:987987/1‑148 (MQ=255)                                                            aaaaCATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTc                                                                                        <  2:536267/149‑1 (MQ=255)                                                            aaaaCATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTc                                                                                        <  2:432237/149‑1 (MQ=255)                                                             aaaCATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTTTGTTTTTTTATTTGTGCATAATCTTCGATTTCt                                                                                       >  1:1035163/1‑149 (MQ=255)                                                                cATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTa                                                                                    <  1:74072/149‑1 (MQ=255)                                                                aaTTCCTTACAAATCCAATGTGAAGAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTa                                                                                    <  1:904414/148‑1 (MQ=255)                                                                     cTTACAAACCAAATGTGAATAAAATTGGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTAAGGGTCTGTCTTCTAATTTGAGCACAATCTTCGATTTCTTTATCtca                                                                               <  2:268904/149‑3 (MQ=39)                                                                      ttAAAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTaaa                                                                              <  2:1066161/149‑1 (MQ=255)                                                                       tACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAAt                                                                             >  1:861623/1‑149 (MQ=255)                                                                         caaatcaaatGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTTTTTTTTACGTGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGa                                                                           >  1:864244/1‑149 (MQ=255)                                                                            atcaaatTTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTa                                                                        <  2:1014930/149‑1 (MQ=255)                                                                            atcaaatGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTa                                                                        >  1:123565/1‑149 (MQ=255)                                                                            atcaaatGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTa                                                                        <  1:1034124/149‑1 (MQ=255)                                                                            atcaaatGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATATACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTACTTTGAGCACAATCTTCGATTTCTTTATCTAAATGACtt                                                                        >  1:317973/1‑148 (MQ=255)                                                                                aatGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCaa                                                                    >  1:475743/1‑149 (MQ=255)                                                                                 atGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAAt                                                                   <  2:416276/149‑1 (MQ=255)                                                                                 atGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAAt                                                                   <  2:226947/149‑1 (MQ=255)                                                                                 atGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAAt                                                                   <  1:284684/149‑1 (MQ=255)                                                                                       ataAAATTCGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATc                                                             <  1:6102/149‑1 (MQ=255)                                                                                       ataAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATc                                                             <  2:181667/149‑1 (MQ=255)                                                                                       ataAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCCCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTACCTAAATGACTACCAATTAAATc                                                             <  2:765134/149‑1 (MQ=255)                                                                                       ataAAATGTGAAATACATTTTCAACCTTGAAAAATTGCTTAAAAGAGATGGGCATCTTCTTTCTCATCTTTCAGTTCTGTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCGAAATGACTACCATGTAAATc                                                             <  2:49645/149‑1 (MQ=37)                                                                                         aaaaTGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTa                                                           <  1:426546/149‑1 (MQ=255)                                                                                         aaaaTGTAATTTACATTTTCAATCTTAAAAAAGTTCTAAAAAAAGATGATCATGTACTGTCTCATCTTTCAGTTTTTTTTTACGGGTCTGTTTTATAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTa                                                           <  1:179568/149‑1 (MQ=38)                                                                                           aaTGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATATTCGATTTCTTTATCTAAATGACTACCCATTAAATCtttt                                                         >  2:84826/1‑149 (MQ=255)                                                                                              gtgATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGGTTTCTTTATCTAAATGACTACCAATTAAATCTGTttct                                                      >  1:233606/1‑149 (MQ=255)                                                                                               tgATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGTTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATttctt                                                     <  2:483042/149‑1 (MQ=255)                                                                                               tcatatACCTTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTTCTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATttctt                                                     <  1:495228/147‑1 (MQ=255)                                                                                                  tataCATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAACTATCTGTCTTCTa                                                  <  2:291355/149‑1 (MQ=255)                                                                                                     aCATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTAttt                                               >  2:405155/1‑148 (MQ=255)                                                                                                     aCATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTg                                               >  2:1094988/1‑149 (MQ=255)                                                                                                     aCATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATATACTGGGGGATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGTCTACCAATTAAATCTATTTCTTCTATTg                                               >  1:774770/1‑149 (MQ=38)                                                                                                      cATTTTCAACCTTAAAAAAGTTCTAACACACGCCTAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTCtttt                                              >  2:516331/1‑147 (MQ=37)                                                                                                      cATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTTAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCCATTTCTTCTATTGt                                              >  1:357764/1‑149 (MQ=255)                                                                                                      cATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAACTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTCCCAATTAAATCTATTTCTTCTAtttt                                              >  1:853393/1‑147 (MQ=255)                                                                                                      cATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCAGCTTTCAGTGCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATatcttcatttct                                              >  2:33075/1‑143 (MQ=38)                                                                                                      cATTTTCAACCTTAAAAAAGTTCTAAAAAAAGAGGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGt                                              <  1:638327/149‑1 (MQ=255)                                                                                                            cAACCTTAAAAAAGTTCTAAAAAAATATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATc                                        <  1:1025333/149‑1 (MQ=255)                                                                                                             aaCCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTATATTTATAAATCg                                       >  2:416301/1‑149 (MQ=255)                                                                                                             aaCCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTAAGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATTTAATTTACTTATATTTACATTTATTTTTTTTTTTGTTAAAtat                                       >  2:312220/1‑147 (MQ=37)                                                                                                                 ttAAAAAAGTTCTAAAAAAAAATGAGCATCTACTGACCCATCTTGCAGTTCTTTTTTACGGGTCTTTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACAAACTAAATCTATTTCCTCTATATTAAAATCGCTAt                                   >  2:465970/1‑149 (MQ=25)                                                                                                                   aaaaaaGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTAtct                                 <  1:115434/149‑1 (MQ=255)                                                                                                                     aaaaGTTCTAAAGAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTCTCTcc                               >  2:676468/1‑149 (MQ=255)                                                                                                                     aaaaGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTATATCGCTATCTcc                               >  2:774543/1‑149 (MQ=255)                                                                                                                      aaaGTTCTAAAAAAAGATGAGCATGTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTAGGCACAATCTTCGATTTCTTTATCTAAATGACTGCCAATTAAATCTATTTTTTCTTTTTTTAAATCGCttgttcca                              >  1:381082/1‑142 (MQ=37)                                                                                                                      aaaGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTccc                              >  2:331553/1‑148 (MQ=255)                                                                                                                         gTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCAtct                           <  2:1095999/149‑1 (MQ=255)                                                                                                                          ttCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCAtctt                          <  1:199026/149‑1 (MQ=255)                                                                                                                           tCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATTACTACCAATTAAATCTATTTTTTTTATTGTTAAATCTCTATCTCcttcttt                         >  1:530989/1‑148 (MQ=37)                                                                                                                             tAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATcttctt                       <  2:522427/149‑1 (MQ=255)                                                                                                                             tAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATcttctt                       <  2:131012/149‑1 (MQ=255)                                                                                                                             tAAAAAAAGAAGAGCATTTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATcttctt                       <  2:945587/149‑1 (MQ=255)                                                                                                                             caaaaaaaGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATcttctt                       <  2:827667/148‑1 (MQ=255)                                                                                                                                  aaaGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATCTTCTTTTAtt                  >  1:909086/1‑148 (MQ=255)                                                                                                                                  aaaGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGACTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTGCCATTTTAATTTTTTTATACCATAACCAAATCGCTATCTCCATCTTCTTTTAtt                  >  1:979527/1‑148 (MQ=25)                                                                                                                                    aggtgcgCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATCTTCTTTTAtctc                <  2:663262/143‑1 (MQ=255)                                                                                                                                           cATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATCTTCTTTTATCTCTGGtatt         >  2:188370/1‑149 (MQ=255)                                                                                                                                           cATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATCTTCTTTTATCTCTGGtatt         <  1:472393/149‑1 (MQ=255)                                                                                                                                           cATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCAATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATCTTCTTTTATCTCTGGtatt         <  2:808163/149‑1 (MQ=255)                                                                                                                                                aCTGTTTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTGCGAGTTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATCTTCTTTTATCTCTGGTATTAtttt    <  2:233606/149‑1 (MQ=255)                                                                                                                                                 cTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATCTTCTTTTATCTCTGGTATTAttttt   >  2:204571/1‑149 (MQ=255)                                                                                                                                                  tGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATCTTCTTTTATCTCTGGTATTAtttttt  >  1:730215/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   TTAAATCAAACCGAATGAGGCTAAATTGGTTATTTTTCAAGATATGATTTGTATAAATCAAAACATTTCTTACAAATCAAATGTGTATAAAATGTGATATACATTTTCAACCTTAAAAAAGTTCTAAAAAAAGATGAGCATCTACTGTCTCATCTTTCAGTTCTTTTTTACGGGTCTGTTTTCTAATTTGAGCACAATCTTCGATTTCTTTATCTAAATGACTACCAATTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATCTTCTTTTATCTCTGGTATTATTTTTT  >  USA300TCH1516_ALE/1892315‑1892608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.