breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	USA300TCH1516_ALE	512,643	0	A	G	58.1%	24.3 / 53.2	44	intergenic (+711/‑6052)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase
*	USA300TCH1516_ALE	111,516	0	C	A	29.0%	51.5 / 20.4	31	Q196K (CAA→AAA)	USA300HOU_RS00520	putative lipoprotein
*	USA300TCH1516_ALE	111,512	0	A	G	28.1%	45.7 / 21.7	32	S194S (TCA→TCG)	USA300HOU_RS00520	putative lipoprotein
*	USA300TCH1516_ALE	1,425,454	0	G	A	26.9%	41.4 / 14.2	26	I272I (ATC→ATT)	pstS	Phosphate‑binding protein PstS

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 2937	740 (0.900)	9 (0.010)	7/270	42.5	1.3%	intergenic (‑263/–)	USA300HOU_RS14900/–	hypothetical protein/–
	?	NC_012417	= 2949	687 (0.860)					intergenic (‑275/–)	USA300HOU_RS14900/–	hypothetical protein/–