| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 672536 | 46 (1.290) | 3 (0.100) | 3/234 | 3.0 | 7.9% | intergenic (+138/‑241) | nth_1/btuF | Endonuclease III/Vitamin B12‑binding protein |
| ? | USA300TCH1516_ALE | 672603 = | 32 (1.070) | intergenic (+205/‑174) | nth_1/btuF | Endonuclease III/Vitamin B12‑binding protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACCTTACTTTAAAAAGTAAACGCTGTGAAGTTAGATAGATGAGTTTATATGAAATATAAAAAATAATTTACTATTTTCTTTTAGTATGTGGACTTATATAATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/672380‑672536‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtttgtgcagcaactgcataaAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTA > USA300TCH1516_ALE/672603‑672740 ACCTTACTTTAAAAAGTAAACGCTGTGAAGTTAGATAGATGAGTTTATATGAAATATAAAAAATAATTTACTATTTTCTTTTAGTATGTGGACTTATATAATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTG > 2:149389/1‑141 ctaacaTTAAAAAGTAAACGCTGTGAAGTTAGATAGATGAGTTTATATGAAATATAAAAAATAATTTACTATTTTCTTTTAGTATGTGGACTTATATAATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTG < 2:361795/135‑1 TACTTTAAAAAGTAAACGCTGTGAAGTTAGATAGATGAGTTTATATGAAATATAAAAAATAATTTACTATTTTCTTTTAGTATGTGGACTTATATAATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCA > 1:242338/1‑141 TACTTTAAAAAGTAAACGCTGTGAAGTTAGATAGATGAGTTTATATGAAATATAAAAAATAATTTACTATTTTCTTTTAGTATGTGGACTTATATAATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCA > 2:83359/1‑141 TACTTTAAAAAGTAAACGCTGTGAAGTTAGATAGATGAGTTTATATGAAATATAAAAAATAATTTACTATTTTCTTTTAGTATGTGGACTTATATAATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCA > 2:121914/1‑141 TACTTTAAAAAGTAAACGCTGTGAAGTTAGATAGATGAGTTTATATGAAATATAAAAAATAATTTACTATTTTCTTTTAGTATGTGGACTTATATAATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCA > 2:345141/1‑141 TACTTTAAAAAGTAAACGCTGTGAAGTTAGATAGATGAGTTTATATGAAATATAAAAAATAATTTACTATTTTCTTTTAGTATGTGGACTTATATAATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCA > 2:327844/1‑141 TTTAAAAAGTAAACGCTGTGAAGTTAGATAGATGAGTTTATATGAAATATAAAAAATAATTTACTATTTTCTTTTAGTATGTGGACTTATATACTACATAGACGCATACAAAATAAAAAACAGTTGTTTGTTTGTGCAGCA < 2:18734/141‑1 AAAAAGTAAACGCTGTGAAGTTAGATAGATGAGTTTATATGAAATATAAAAAATAATTTACTATTTTCTTTTAGTATGTGGACTTATATAATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACT > 2:62903/1‑141 AGTAAACGCTGTGAAGTTAGATAGATGAGTTTATATGAAATATAAAAAATAATTTACTATTTTCTTTTAGTATGTGGACTTATATAATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCAT < 1:234337/141‑1 AGTAAACGCTGTGAAGTTAGATAGATGAGTTTATATGAAATATAAAAAATAATTTACTATTTTCTTTTAGTATGTGGACTTATATAATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCAT > 1:74168/1‑141 GTTTATATGAAATATAAAAAATAATTTACTATTTTCTTTTAGTATGTGGACTTATATAATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGA > 2:284677/1‑141 TACTATTTTCTTTTAGTATGTGGACTTATATAATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACA < 1:404783/141‑1 TATAATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAATCCCTCTAATCGCTAAAG < 1:284677/141‑1 CAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCT > 1:1421/1‑141 CAACTACATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCT > 1:215790/1‑141 tttttCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTA > 2:299728/6‑141 AACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCACTCTA > 2:330989/1‑141 CATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGC < 2:359499/141‑1 CATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGC < 2:45738/141‑1 TAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTA < 2:284830/141‑1 TAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTA < 2:201296/141‑1 TAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTA > 1:77559/1‑141 ACCTTACTTTAAAAAGTAAACGCTGTGAAGTTAGATAGATGAGTTTATATGAAATATAAAAAATAATTTACTATTTTCTTTTAGTATGTGGACTTATATAATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/672380‑672536‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtttgtgcagcaactgcataaAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTA > USA300TCH1516_ALE/672603‑672740 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |