New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 800928	76 (0.900)	8 (0.100)	5/246	NT	9.5%	intergenic (+62/‑289)	hisC_1/USA300HOU_RS03915	Histidinol‑phosphate aminotransferase/Putative 5'(3')‑deoxyribonucleotidase
	?	USA300TCH1516_ALE	801948 =	80 (1.000)					intergenic (+189/+435)	USA300HOU_RS03915/USA300HOU_RS03920	Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase

TGTTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTG  >  USA300TCH1516_ALE/800791‑801068                                                                                                                                           |                                                                                                                                             tgtTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTg                                                                                                                                           <  1:545199/141‑1 (MQ=255)    tAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTCGCGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACACCAACTTACAt                                                                                                                                        >  2:732162/1‑141 (MQ=255)          tACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACTGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTg                                                                                                                                  <  1:522560/141‑1 (MQ=255)           aCAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGTA‑AAATTTATTTCGTCGTCCCACCCCAACataaagaaatact                                                                                                                                 <  2:736599‑M1/141‑14 (MQ=255)           aCAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACataaagaaatact                                                                                                                                 <  2:396171‑M1/141‑14 (MQ=255)           aCAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGt                                                                                                                                 >  1:44021/1‑141 (MQ=255)           aCAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGGGGGACAGAAATGATACTTTCGCA‑AAATTTCTTTCGTCGTCCCACCCCAACTTGCATTGTCTGt                                                                                                                                 >  1:596970/1‑141 (MQ=255)           aCAATTGGTTTTAAAGAACAAAATGAGAAAATGTGAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGTGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACataaagaaatact                                                                                                                                 <  2:466442‑M1/141‑14 (MQ=255)            cAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTa                                                                                                                                >  1:495115/1‑141 (MQ=255)            cAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCACTGTCTGTa                                                                                                                                >  1:367354/1‑141 (MQ=255)               ttGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGaa                                                                                                                             >  1:201897/1‑141 (MQ=255)                  gTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAAtt                                                                                                                          >  1:900243/1‑141 (MQ=255)                   tttgAAAGAAGAAAATGATAAAATGTGAGAAGTTTTAGCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTg                                                                                                                         <  2:158418/141‑1 (MQ=255)                    tttAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTgg                                                                                                                        >  2:585243/1‑141 (MQ=255)                      tAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGa                                                                                                                      >  1:535087/1‑141 (MQ=255)                         agaagaAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACCGAAGTGATACTTCAGCATAAATATA‑GTCGTCGTCCCACCCCAACTTGCATTGTCGGTAGAAATTGGGAATc                                                                                                                   <  2:221930/141‑1 (MQ=25)                         aaaaaaaaaTGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATc                                                                                                                   <  2:1013805/136‑1 (MQ=255)                          gAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATcc                                                                                                                  <  1:246353/141‑1 (MQ=255)                          gAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATcc                                                                                                                  <  1:45735/141‑1 (MQ=255)                            aCAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGACATTGGGAATCCac                                                                                                                >  1:17766/1‑140 (MQ=255)                            aCAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCaa                                                                                                                >  1:1007544/1‑141 (MQ=255)                                aaTGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGCAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTtc                                                                                                            >  1:805176/1‑141 (MQ=255)                                aaTGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTtc                                                                                                            >  1:201904/1‑141 (MQ=255)                                  tGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTtctc                                                                                                          <  2:605601/141‑1 (MQ=255)                                  tGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTtccc                                                                                                          >  2:104947/1‑139 (MQ=255)                                   gATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAATAGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACACCAACTTGCATGATCTGTACACATTGGGGATCCAATTTctct                                                                                                         >  2:816665/1‑141 (MQ=21)                                    aTAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCtt                                                                                                        >  1:272991/1‑141 (MQ=255)                                       aaaTGATAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGAGACAAAATTCATACTTTCTCA‑AAATTCATTTCGTCGTCCCACCCCAACTTGCATAGTCTGTAGATATTAGGACTCCAATTTCTCTctgt                                                                                                     >  2:834939/1‑141 (MQ=21)                                           gTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTATTTGTTggg                                                                                                 >  2:920738/1‑141 (MQ=255)                                           gTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTATCTGTAGAAATTGGGAATCCAATCTCTCTTTGTTtgg                                                                                                 >  2:150676/1‑141 (MQ=255)                                                 aGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTATCTGTATAAATTGTGAATCCAATTTCTCTTTGTTGGGGCCtcg                                                                                           >  2:155313/1‑141 (MQ=255)                                                 aGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCACAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGccccc                                                                                           >  2:920967/1‑140 (MQ=255)                                                   ttttATCAAAAGTTAGATACGAGTAGTAAGTGGGGAGTGGGACTGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCccgcc                                                                                         <  2:922582/141‑1 (MQ=17)                                                   ttgtATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGTGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCccgcc                                                                                         <  2:143156/138‑1 (MQ=255)                                                    tttATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCccgccg                                                                                        <  2:801613/141‑1 (MQ=255)                                                     ttATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAGTTGGGAATCCAATTTCTCTTTGTTGTGGCCCCGCCgg                                                                                       >  2:158248/1‑141 (MQ=255)                                                     ttATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTAATCCAATTTCTCTTTGTTGGGGCCCCGCCgg                                                                                       >  2:80358/1‑141 (MQ=255)                                                     ttATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCCATTTCTCTTTGTTCGGGCCCCGCCgg                                                                                       >  2:989398/1‑141 (MQ=255)                                                     ttATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCgg                                                                                       <  1:455434/141‑1 (MQ=255)                                                           aaCTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGt                                                                                 >  1:159574/1‑141 (MQ=255)                                                            aCTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGACCCACCCCAACTTGAATTGTCTCAGCAAAGCTGGAATGTAATTTCGCTCTGCTGGGGCCCCGCCGGCAAGGtt                                                                                >  1:480545/1‑141 (MQ=18)                                                              tttAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCTCACCCCAACataaagaaatactttttctttagaaattagtatttcttatgcatgagtgtaactcatgcattca                                                                              <  2:911345‑M1/141‑65 (MQ=255)                                                              tttAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACataaagaaatactttttctttagaaattagtatttcttatgcatgagtgtaactcatgcattca                                                                              <  1:780460‑M1/141‑65 (MQ=255)                                                                tAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑ATATTTATTTCGTCGTCCCTCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACt                                                                            <  1:125316/141‑1 (MQ=255)                                                                  aaTACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTTGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAg                                                                          >  1:843355/1‑141 (MQ=255)                                                                  aaTACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGGTGACtcg                                                                          >  1:27379/1‑139 (MQ=255)                                                                    tACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGaa                                                                        >  1:715743/1‑141 (MQ=255)                                                                    tACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTAGGAAACCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGaa                                                                        >  1:376948/1‑141 (MQ=255)                                                                     aCGAATAGTAAGGGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAAt                                                                       <  1:497056/141‑1 (MQ=255)                                                                         aTAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGaa                                                                   <  2:631748/141‑1 (MQ=255)                                                                            gTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATACAATTTCTCTTTGTTGGGGCCTCGCCGGCAAGGATGAATAGAATTGaaaaa                                                                >  2:648478/1‑141 (MQ=255)                                                                                     gAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGTACTCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAAGTTGACTAGAATTGCAAAAAGCCTCTTa                                                       >  2:489648/1‑141 (MQ=14)                                                                                     gAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAAATTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGGTTACTAGAATTGAAAAAAGCTTGttc                                                       >  1:257360/1‑140 (MQ=255)                                                                                      aGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACataaagaaatactttttctttagaaattagtatttcttatgcatgagtgtaactcatgcattcatatttttaattacacattatctgt                                                      >  2:32379‑M1/1‑53 (MQ=255)                                                                                         gggACAGAAATGTTACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCGCTTTGTTGGTGCCCCGCCGGCAAGGTTGACTAGAATTGAAATAAGCTTGTTACAAg                                                   <  2:794756/141‑1 (MQ=255)                                                                                         gggACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTTAAAAAAGCTTGTTACAAg                                                   >  2:649139/1‑141 (MQ=38)                                                                                         gggACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAg                                                   <  1:314595/141‑1 (MQ=37)                                                                                         gggACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAg                                                   >  2:313700/1‑141 (MQ=39)                                                                                         gggACAGAAATGAGACGTTCGCG‑AAATTTGTTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCTAAGTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAg                                                   <  2:626264/141‑1 (MQ=11)                                                                                          ggACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTATAATTGAAAAAAGCTTGTTACAAgc                                                  >  1:670306/1‑141 (MQ=255)                                                                                           gACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACataaagaaatactttttctttagaaattagtatttcttatgcatgagtgtaactcatgcattcatatttttaagtacacattagctgtgacta                                                 <  2:843504‑M1/141‑94 (MQ=255)                                                                                           gACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcg                                                 >  2:832060/1‑141 (MQ=39)                                                                                           gACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcg                                                 >  2:107012/1‑141 (MQ=39)                                                                                            aCAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc                                                >  2:390971/1‑141 (MQ=40)                                                                                            aCAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc                                                >  1:155813/1‑141 (MQ=40)                                                                                                   gtaTACTTTCGCA‑TAATTGATTTCGTCTTACCATCCCAAATGCCTCTGTCTGTATGAATTGGGAGTCCAATTTCTCTTTCTTGGGGCCCCTCCGGCAAGCTTTACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCg                                         <  2:995146/139‑1 (MQ=14)                                                                                                    tatACTTACGCA‑ATAGTTATTTCGTCGTCCCACCCCAACataaagaaatactttttctttagaaattagtatttcttatgcatgagtgtaactcatgcattcatatttttaagtacacattagctgtgactaatgataaag                                        <  2:719317‑M1/140‑103 (MQ=255)                                                                                                    gATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGGATTGAAAAAAGCTTGTTACAAGCGCATTTTCGt                                        <  1:383405/141‑1 (MQ=255)                                                                                                       aCTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAACAAGCCTGTTACAAGCGCATTTTCGTTcc                                     >  2:593400/1‑140 (MQ=255)                                                                                                         tttCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGt                                   >  1:786441/1‑141 (MQ=38)                                                                                                          ttCGCA‑TAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTc                                  <  2:49778/141‑1 (MQ=25)                                                                                                          ttCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTc                                  <  1:133024/141‑1 (MQ=35)                                                                                                           tCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCa                                 >  1:230404/1‑141 (MQ=35)                                                                                                            cGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCaa                                >  2:152131/1‑141 (MQ=35)                                                                                                             gCA‑AAATTTATTTCGTCGTCACACTAAAAGTATCAGTGTCTGTAGAAATTGGGAATCCAATCTCTCTGGATTATTACTCCTCCGGCAAGGTTGACTTGAATTGAAAAAAACTTGTTACAAGCGCATTTTCGTTCGTTCAac                               >  2:783697/1‑141 (MQ=2)                                                                                                                 aaaTTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTTAGTCAactac                            >  1:629820/1‑141 (MQ=17)                                                                                                                  aaTTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCCAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAactact                           <  1:147572/141‑1 (MQ=17)                                                                                                                       atttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCaa                      <  1:965708/141‑1 (MQ=33)                                                                                                                       atttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCaa                      <  1:441418/141‑1 (MQ=33)                                                                                                                        tttCGTCGTCACACACTAAGTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTCGGGGCCCGGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAat                     <  2:367354/141‑1 (MQ=11)                                                                                                                            gtcgtcCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATaa                 >  1:927609/1‑141 (MQ=35)                                                                                                                              cgtcCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACt               <  2:201904/141‑1 (MQ=35)                                                                                                                              cgtcCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACt               <  2:805176/141‑1 (MQ=35)                                                                                                                                 cccACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACtttt            <  1:123442/141‑2 (MQ=25)                                                                                                                                   cACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTa          <  1:390971/141‑1 (MQ=35)                                                                                                                                       ccAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGc      <  1:725243/141‑1 (MQ=35)                                                                                                                                       ccAACTTGCATTCTCTGTAGAAATTGGGAATCCAAGTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGc      <  1:30334/141‑1 (MQ=25)                                                                                                                                       ccAACTCGCATTGTCTGTAGAAATTGGGAATCCAATGTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGc      <  1:83361/141‑1 (MQ=25)                                                                                                                                       ccAACGTGCATTGGAGGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCACGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGc      <  1:933592/141‑1 (MQ=11)                                                                                                                                        cAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCa     <  1:26122/141‑1 (MQ=35)                                                                                                                                         aaCataaagaaataatttttctttagaaattagtatttcttatgcatgagtgtaattcatgcattcatatttttaagtacaaattagctgtgactaatgatagagaatagctacataatcattcattagtctttctttata    >  2:639237‑M1/1‑3 (MQ=255)                                                                                                                                         aaCTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCTAATATAACTTTGTAGAGCAt    >  1:112067/1‑141 (MQ=21)                                                                                                                                          aCataaagaaatactttttctttagaaattagtatttcttatgcatgagtgtaactcatgcattcatatttttaagtacacattagctgtgactaatgataaagaatcgctacataatcaatcattagtcgttctttatca   <  2:419974‑M1/141‑140 (MQ=255)                                                                                                                                           cTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTg  <  1:493285/141‑1 (MQ=38)                                                                                                                                           cTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTGTCGTTCAGTCAACTACCGCCTATATAACTTTGTAGAGCATTg  >  2:4510/1‑141 (MQ=255)                                                                                                                                           |                                                                                                                                             TGTTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCA‑AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTG  >  USA300TCH1516_ALE/800791‑801068

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.