| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | USA300TCH1516_ALE | 643,716 | Δ21 bp | 7.4% | intergenic (‑364/+165) | yjjP_1 ← / ← USA300HOU_RS03070 | Inner membrane protein YjjP/Putative heme‑dependent peroxidase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 643715 | 40 (0.630) | 3 (0.050) | 3/254 | NT | 7.4% | intergenic (‑363/+186) | yjjP_1/USA300HOU_RS03070 | Inner membrane protein YjjP/Putative heme‑dependent peroxidase |
| ? | USA300TCH1516_ALE | 643737 = | 36 (0.580) | intergenic (‑385/+164) | yjjP_1/USA300HOU_RS03070 | Inner membrane protein YjjP/Putative heme‑dependent peroxidase | |||||
AAATAGGTTAAAATAATATTAGTTAACCATTACAAAAATTGTATAGAGTAGCGACTGTATAATTTCTATTGAGGTTAACGTTTATATGTAGTGATAGTAGTTAAAGTTCTCCCAAGGAAGACTACTCGGGTACACTTTGCTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/643573‑643715‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatTGATAATACATTAGCACATATATATAAGTTTAAACATACAGATTTCAACTATTTACCAAATCACGTCTTATGTATACGGGAATATACTGAAGATAAACGAAAAATTCCAAGCTTAAACCGATAAGCTTGGAATTTTTTT > USA300TCH1516_ALE/643737‑643875 AAATAGGTTAAAATAATATTAGTTAACCATTACAAAAATTGTATAGAGTAGCGACTGTATAATTTCTATTGAGGTTAACGTTTATATGTAGTGATAGTAGTTAAAGTTCTCCCAAGGAAGACTACTCGGGTACACTTTGCT > 2:750529/1‑141 ATAGGTTAAAATAATATTAGTTAACCATTACAAAAATTGTATAGAGTAGCGACTGTATAATTTCTATTGAGGTTAACGTTTATATGTAGTGATAGTAGTTAAAGTTCTCCCAAGGAAGACTACTCGGGTACACTTTGCTAT < 1:665100/141‑1 AGGTTAAAATAATATTAGTTAACCATTACAAAAATTGTATAGAGTAGCGACTGTATAATTTCTATTGAGGTTAACGTTTATATGTAGTGATAGTAGTTAAAGTTCTCCCAAGGAAGACTACTCGGGTACACTTTGCTATTG < 1:319429/141‑1 ATTAGTTAACCATTACAAAAATTGTATAGAGTAGCGAATGTATAATTTCTATTGAGGTTAACGTTTATATCCAGTGATAGTAGTTAAAGTTCTCCCAACGAAGACTACTCGCGTACACTTTGCTATTGCTACTCCATTAGC > 2:200682/1‑141 TATGTAGTGATAGTAGTTAAAGTTCTCCCAAGGAAGACTACTCGGGTACACTTTGCTATTGATAATACATTAGCACATATATATAAGTTTAAACATACAGATTTCAACTATTTACCAAATCACGTCTTATGTATACGGGAA < 1:730316/141‑1 tTGATAGTAGTTAAAGTTCTCCCAAGGAGGACTACTCGGGTACACTTTGCTATTGATAATACATTAGCACATATATATAAGTTTAAACATACAGATTTCAACTATTTACCAAATCACGTCTTATGTATACGGGAATATACT < 1:528326/140‑1 ATTGATAATACATTAGCACATATATATAAGTTTAAACATACAGATTTCAACTATTTACCAAATCACGTCTTATGTATACGGGAATATACTGAAGATAAACGAAAAATTCCAAGCTTAAACCGATAAGCTTGGACTTTTTTT > 2:40772/1‑141 ATTGATAATACATTAGCACATATATATAAGTTTAAACATACAGATTTCAACTATTTACCAAATCACGTCTTATGTATACGGGAATATACTGAAGATAAACGAAAAATTCCAAGCTTAAACCGATAAGCTTGGAATTTTTTT > 1:28660/1‑141 AAATAGGTTAAAATAATATTAGTTAACCATTACAAAAATTGTATAGAGTAGCGACTGTATAATTTCTATTGAGGTTAACGTTTATATGTAGTGATAGTAGTTAAAGTTCTCCCAAGGAAGACTACTCGGGTACACTTTGCTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/643573‑643715‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatTGATAATACATTAGCACATATATATAAGTTTAAACATACAGATTTCAACTATTTACCAAATCACGTCTTATGTATACGGGAATATACTGAAGATAAACGAAAAATTCCAAGCTTAAACCGATAAGCTTGGAATTTTTTT > USA300TCH1516_ALE/643737‑643875 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |