| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1801134 | 44 (0.690) | 4 (0.060) | 4/254 | NT | 8.2% | coding (186/1122 nt) | citZ | Citrate synthase 2 |
| ? | USA300TCH1516_ALE | = 1801146 | 47 (0.760) | coding (174/1122 nt) | citZ | Citrate synthase 2 | |||||
AGCATCAGGATCGAAATGTGCAATATATGATAATGACGTACGTAATGCTGTCATTGGATGCACGTGATCTGTAACATACTCCTCAAAATGTGTATACACACGAGGATTTAATGTCATGTATTGATTTAATTTCCCTTTTAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1800993‑1801134‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaAGAGCTTGCTCATCTAAAAGGGAAATTAAATCAATACATGACATTAAATCCTCGTGTGTATACACATTTTGAGGAGTATGTTACAGATCACGTGCATCCAATGACAGCATTACGTACGTCATTATCATATATTGCACA < USA300TCH1516_ALE/1801146‑1801009 atCATTAGGGTCGAAATGTGCAATAGATGATAATGAGGTACGTAATGCTGTCATTGGATGCACGTGATCTGTAACAGACGCCTCAAAATGTGTATACACACGAGGATTTAATGTCATGTATTGATTTAATTTCCCTTGTAG < 1:259230/139‑1AGCATCAGGATCGAAATGTGCAATATATGATAATGACGTACGTAATGCTGTCATTGGATGCACGTGTTCTGTAACATACTCCTCAAAATGTGTATACACACGAGGATTTAATGTCATGTATTGATTTAACTTCCCTTTTAt > 2:659218/1‑140 ACGTGATCTGTAACATACTCCTCAAAATGTGTATACACACGAGGATTTAATGTCATGTATTGATTTAATTTCACTTTTAGATGAGCAAGCTCTTCTAAAAGGGAAATTAAATCAATACATGACATTAAATCCTCGTGTATA > 1:34180/1‑141 ACTCCTCAAAATGTTTATACACATTAGGATTTAATGTCATGTATTGATTTAATTTCCCTTTTAGATGAGCAAGCTCTTCTAAAAGGGAAATTAAATCAATACATGACATTAAATCCTCGTGTGTATACACATTTTGAGGAG < 2:687951/141‑1 CTCCTCAAAATGTGTATACACACGAGGATTTAATGTCATGTATTGAGTTAATTTCCCTTTTAGATGAGCAAGCTCTTGCAAAAAGGAAATTAAATCAATACATGACATTAAATCCTCGTGTGTAGACACCTTTGAAGGAGa > 1:687951/1‑140 tatACATGAGGATTTAATGTCATGTATTGATTTAATTTCTCTTTTAGATTAGCAAGCTTTTCTAAAAGGTAAATTAAATCAATACATGACATTAAATCCTCGTGTGTATACACATTTTGAGGAGTATGTTACAGATCACGT < 2:34180/138‑1 AGAAGCGCTTGGTTATCTAAAAGGGAAATTAAATGAATACATGACATTAAATCCTCGTGTGTAGACACATTTTGGGGAGTATGTTACAGATCACGTGCATCCAATGACAGCATTACGTACGTCATTATCATATATTGCACA < 2:114383/141‑1 AGAAGATCTTGCTCATCTAAAAGGGAAATTAAATCAATACATGACATTAAATCCTCGTGTGTATACACATTTTGAGGAGTATGTTACAGATCACGTGCATCCAATGACAGCATAACGTACGTCATTATCATATATTGCACA < 2:342275/141‑1 AGCATCAGGATCGAAATGTGCAATATATGATAATGACGTACGTAATGCTGTCATTGGATGCACGTGATCTGTAACATACTCCTCAAAATGTGTATACACACGAGGATTTAATGTCATGTATTGATTTAATTTCCCTTTTAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1800993‑1801134‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaAGAGCTTGCTCATCTAAAAGGGAAATTAAATCAATACATGACATTAAATCCTCGTGTGTATACACATTTTGAGGAGTATGTTACAGATCACGTGCATCCAATGACAGCATTACGTACGTCATTATCATATATTGCACA < USA300TCH1516_ALE/1801146‑1801009 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |