mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 48 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2840863 | 145 (1.120) | 3 (0.020) | 3/238 | NT | 2.1% | intergenic (‑184/‑7) | hisZ/USA300HOU_2682 | possible ATP phosphoribosyltransferase regulatory subunit/hypothetical protein |
| ? | CP000730 | = 2840932 | 146 (1.210) | coding (63/108 nt) | USA300HOU_2682 | hypothetical protein | |||||
| * | ? | CP000730 | 2793464 = | 175 (1.350) | 5 (0.040) | 3/234 | NT | 3.3% | coding (2179/2982 nt) | pip | possible bacteriophage infection protein |
| ? | CP000730 | 2793513 = | 136 (1.140) | coding (2130/2982 nt) | pip | possible bacteriophage infection protein | |||||
| * | ? | CP000730 | = 2726829 | 150 (1.160) | 3 (0.020) | 3/244 | NT | 2.1% | intergenic (‑256/+86) | USA300HOU_2581/USA300HOU_2582 | hypothetical protein/hypothetical protein |
| ? | CP000730 | = 2726876 | 130 (1.050) | intergenic (‑303/+39) | USA300HOU_2581/USA300HOU_2582 | hypothetical protein/hypothetical protein | |||||
| * | ? | CP000730 | = 2716752 | 118 (0.910) | 6 (0.050) | 4/232 | NT | 4.9% | intergenic (+60/+90) | ynzC/USA300HOU_2569 | hypothetical protein/possible lactoylglutatione lyase |
| ? | CP000730 | = 2716804 | 123 (1.040) | intergenic (+112/+38) | ynzC/USA300HOU_2569 | hypothetical protein/possible lactoylglutatione lyase | |||||
| * | ? | CP000730 | 2661788 = | 142 (1.100) | 4 (0.040) | 4/222 | NT | 3.3% | intergenic (‑181/‑140) | USA300HOU_2514/USA300HOU_2515 | HAD superfamily hydrolase/ABC superfamily ATP binding cassette transporter, ABC protein |
| ? | CP000730 | 2661832 = | 109 (0.970) | intergenic (‑225/‑96) | USA300HOU_2514/USA300HOU_2515 | HAD superfamily hydrolase/ABC superfamily ATP binding cassette transporter, ABC protein | |||||
| * | ? | CP000730 | 2653484 = | 115 (0.890) | 5 (0.040) | 5/248 | NT | 4.6% | coding (18/153 nt) | USA300HOU_2506 | hypothetical protein |
| ? | CP000730 | 2653543 = | 97 (0.770) | coding (77/153 nt) | USA300HOU_2506 | hypothetical protein | |||||
| * | ? | CP000730 | 2569653 = | 129 (1.000) | 6 (0.050) | 5/236 | NT | 5.0% | intergenic (+5/+87) | fmtA/USA300HOU_2430 | FmtA protein/possible epimerase/dehydratase |
| ? | CP000730 | 2569712 = | 109 (0.910) | intergenic (+64/+28) | fmtA/USA300HOU_2430 | FmtA protein/possible epimerase/dehydratase | |||||
| * | ? | CP000730 | = 2497916 | 143 (1.110) | 3 (0.030) | 3/232 | NT | 2.1% | intergenic (+21/+65) | corA/scrA | MIT family metal ion transporter CorA/PTS family sucrose porter component IIBC |
| ? | CP000730 | = 2497963 | 147 (1.250) | intergenic (+68/+18) | corA/scrA | MIT family metal ion transporter CorA/PTS family sucrose porter component IIBC | |||||
| * | ? | CP000730 | = 2489741 | 120 (0.930) | 3 (0.030) | 4/230 | NT | 2.6% | intergenic (+90/+63) | USA300HOU_2350/USA300HOU_2351 | hypothetical protein/hypothetical lipoprotein |
| ? | CP000730 | = 2489759 | 120 (1.030) | intergenic (+108/+45) | USA300HOU_2350/USA300HOU_2351 | hypothetical protein/hypothetical lipoprotein | |||||
| * | ? | CP000730 | 2388283 = | 146 (1.130) | 4 (0.040) | 4/220 | NT | 3.3% | intergenic (+18/+84) | USA300HOU_2247/USA300HOU_2248 | MFS family major facilitator transporter/hypothetical protein |
| ? | CP000730 | 2388362 = | 106 (0.950) | intergenic (+97/+5) | USA300HOU_2247/USA300HOU_2248 | MFS family major facilitator transporter/hypothetical protein | |||||