New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2830200	63 (1.150)	5 (0.100)	5/232	NT	8.4%	intergenic (+28/+163)	icaC/USA300HOU_2670	intercellular adhesion protein C/hypothetical protein
	?	CP000730	= 2830235	51 (1.010)					intergenic (+63/+128)	icaC/USA300HOU_2670	intercellular adhesion protein C/hypothetical protein

CGATATCACTACTATTCATTTTAGGATTATGTATAGGTGTCGGCATGATATTGCGTGAATTCTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2830051‑2830200 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacacgcggtAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTGTTTTTAACATAGCTTAATAATTAATAAGCATTAATGTTCAATTTATATGGTTGTTTTCCAATAATAAACCTAAAGATATAGAATTCACGCAATATC  <  CP000730/2830235‑2830097                                                                                                                                                                                                                                                                                                   CGATATCACTACTATTCATTTTAGGATTATGTATAGGTGTCGGCATGATATTGCGTGAATTCTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAA                                                                                                                                                      >  2:92703/1‑141   ATATCACTACTATTCATTTTAGGATTATGTATAGGTGTCGGCATGATATTGCGTGAATTCTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAAC                                                                                                                                                    >  1:417661/1‑141     ATCACTACTATTCATTTTAGGATTATGTATAGGTGTCGGCATGATATTGCGTGAATTCTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACAC                                                                                                                                                  <  1:667731/141‑1     ATCACTACTATTCATTTTAGGATTATGTATAGGTGTCGGCATGATATTGCGTGAATTCTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACAC                                                                                                                                                  <  1:667707/141‑1       CACTACTATTCATTTTAGGATTATGTATAGGTGTCGGCATGATATTGCGTGAATTCTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGC                                                                                                                                                >  2:659471/1‑141         CTACTATTCATTTTAGGATTAAGTATAGGCGTCGGCATGCTATTGCGTGAATTCTATATCTTTAGGATTATTATTGGAAAACAACAATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGG                                                                                                                                              >  2:111325/1‑141                                                     GCGTGAATTCTATAGCTTTAGGTTTATTATTGGAAAACAACCATATAAAGTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTG                                                                                                  <  2:451954/141‑1                                                                                           AACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACC                                                                                                       >  1:209371/1‑98                                                                                           AACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACC                                                                                                       <  2:209371/98‑1                                                                                                    AATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATT                                                                                                                <  1:213364/80‑1                                                                                                    AATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATT                                                                                                                >  2:213364/1‑80                                                                                                                                              ACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTGTTTTTAACATAGCTTAATAATTAATAAGCATTAATGTTCAATTTATATGGTTGTTTTCCAATAATAAACCTAAAGATATAGAATTCACG         >  1:484478/1‑141                                                                                                                                              ACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTGTTTTTAACATAGCTTAATAATTAATAAGCATTAATGTTCAATTTATATGGTTGTTTTCCAATAATAAACCTAAAGATATAGAATTCACG         <  1:44761/141‑1                                                                                                                                                ACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTGTTTTTAACATAGCTTAATAATTAATAAGCATTAATGTTCAATTTATATGGTTGTTTTCCAATAATAAACCTAAAGATATAGAATTCACGCA       >  1:284565/1‑141                                                                                                                                                     GTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTGTTTTTAACATAGCTTAATAATTAATAAGCATTAATGTTCAATTTATATGGTTGTTTTCCAATAATAAACCTAAAGATATAGAATTCACGCAATATC  >  2:120820/1‑141                                                                                                                                                                                                                                                                                                   CGATATCACTACTATTCATTTTAGGATTATGTATAGGTGTCGGCATGATATTGCGTGAATTCTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2830051‑2830200 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacacgcggtAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTGTTTTTAACATAGCTTAATAATTAATAAGCATTAATGTTCAATTTATATGGTTGTTTTCCAATAATAAACCTAAAGATATAGAATTCACGCAATATC  <  CP000730/2830235‑2830097

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.