Predicted mutation
evidence seq id position mutation annotation gene description
JC CP000730 1,441,102 (TGTTG)1→2 coding (127/624 nt) xpaC → 5‑bromo‑4‑chloroindolyl phosphate hydrolysis protein XpaC

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 14410970 (0.000)36 (1.030)
+TGTTG
16/274 0.6 100% coding (122/624 nt) xpaC 5‑bromo‑4‑chloroindolyl phosphate hydrolysis protein XpaC
?CP000730 1441098 = 0 (0.000)coding (123/624 nt) xpaC 5‑bromo‑4‑chloroindolyl phosphate hydrolysis protein XpaC

AAAGGAAGATGACAGTGAGATATAATATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTATCGCTATATTCGAAATCAGTTAAATCATACACACCAAAAACTTAGAGGTATTTTAAA  >  CP000730/1440962‑1441241
                                                                                                                                        |                                                                                                                                               
aagatgacagtgagatataatatttctcatatatttggggtgttagtgggaattcctgtagcgtttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCttttt                                                                                                                                      <  2:380400‑M2/12‑1 (MQ=255)
aagatgacagtgagatataatatttctcatatatttggggtgttagtgggaattcctgtagcgtttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCttttt                                                                                                                                      <  2:289456‑M2/12‑1 (MQ=255)
   atgacagtgagatataatatttctcatatatttggggtgttagtgggaattcctgtagcgtttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAAt                                                                                                                                   <  2:220428‑M2/15‑1 (MQ=255)
   atgacagtgagatataatatttctcatatatttggggtgttagtgggaattcctgtagcgtttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAAt                                                                                                                                   <  2:350660‑M2/15‑1 (MQ=255)
   atgacagtgagatataatatttctcatatatttggggtgttagtgggaattcctgtagcgtttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAAt                                                                                                                                   <  1:352619‑M2/15‑1 (MQ=255)
   atgacagtgagatataatatttctcatatatttggggtgttagtgggaattcctgtagcgtttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAAt                                                                                                                                   <  2:245166‑M2/15‑1 (MQ=255)
    tgacagtgagatataatatttctcatatatttggggtgttagtgggaattcctgtagcgtttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAATg                                                                                                                                  >  1:130322‑M2/133‑148 (MQ=255)
    tgacagtgagatataatatttctcatatatttggggtgttagtgggaattcctgtagcgtttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAATg                                                                                                                                  >  2:297072‑M2/133‑148 (MQ=255)
    tgacagtgagatataatatttctcatatatttggggtgttagtgggaattcctgtagcgtttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAATg                                                                                                                                  >  2:190046‑M2/133‑148 (MQ=255)
    tgacagtgagatataatatttctcatatatttggggtgttagtgggaattcctgtagcgtttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAATg                                                                                                                                  >  1:200265‑M2/133‑148 (MQ=255)
                    tatttctcatatatttggggtgttagtgggaattcctgtagcgtttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAATGACATACCTACCGATAc                                                                                                                  >  2:307022‑M2/117‑148 (MQ=255)
                    tatttctcatatatttggggtgttagtgggaattcctgtagcgtttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAATGACATACCTACCGATAc                                                                                                                  >  2:83024‑M2/117‑148 (MQ=255)
                    tatttctcatatatttggggtgttagtgggaattcctgtagcgtttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAATGACATACCTACCGATAc                                                                                                                  <  1:345780‑M2/32‑1 (MQ=255)
                    tatttctcatatatttggggtgttagtgggaattcctgtagcgtttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattggtgTGTTGGCTTTTTAATGACATACCTACCGATAc                                                                                                                  >  1:381971‑M2/117‑148 (MQ=255)
                     atttctcatatatttggggtgttagtgggaattcctgtagcgtttttaacaagcatatttgggatgattgcacttgatgtatctttgttaattgatatgtcgattggtattgttgTGTTGGCTTTTTAATGACATACCTACCGATACa                                                                                                                 >  1:390817‑M2/116‑148 (MQ=255)
                           catatatttggggtgttagtgggaattcctgtagcgtttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACt                                                                                                           <  2:154649‑M2/39‑1 (MQ=255)
                           catatatttggggtgttagtgggaattcctgtagcgtttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACt                                                                                                           <  1:369661‑M2/39‑1 (MQ=255)
                                         gttagtgggaattcctgtagcgtttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAat                                                                                             >  1:30396‑M2/96‑148 (MQ=255)
                                         gttagtgggaattcctgtagcgtttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAat                                                                                             <  1:228647‑M2/53‑1 (MQ=255)
                                         gttagtgggaattcctgtagcgtttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAat                                                                                             >  1:234488‑M2/96‑148 (MQ=255)
                                                        tgtagcgtttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTg                                                                              <  1:205592‑M2/68‑1 (MQ=255)
                                                        tgtagcgtttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTg                                                                              <  1:144507‑M2/68‑1 (MQ=255)
                                                        tatagcatttttaacaagcatatttgtgattattgcacgtgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAATGACATAAAAAAAAAAAAAAAAACTCACTTCACGCAAATATTTAAACGAAATTg                                                                              <  2:300862‑M2/68‑1 (MQ=255)
                                                                ttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACt                                                                      >  1:159233‑M2/73‑148 (MQ=255)
                                                                ttttaacaagcatatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACt                                                                      >  1:279907‑M2/73‑148 (MQ=255)
                                                                           atatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTa                                                           >  1:107236‑M2/62‑148 (MQ=255)
                                                                           atatttgggatgattgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTGGGCTGTTTAATTACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTa                                                           >  1:370151‑M2/62‑148 (MQ=255)
                                                                                        ttgcacttgatgtatcttttttatttgatttttctattggtagtggtgTGGTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACTAAATTGGTTTGACTAGAAAAGACTATCTCTATATTCGa                                              >  2:370128‑M2/49‑148 (MQ=255)
                                                                                        ttgcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTAAATTAACGAAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTATCGCTATATTCGa                                              >  1:102472‑M2/49‑148 (MQ=255)
                                                                                        ttgcacttgatgtatcttttttaattgatatgtctattggnattgttgTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTATGGCTATATTCGa                                              >  1:319468‑M2/49‑148 (MQ=255)
                                                                                          gcacttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTTATTTCTTACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTATCGCTATATTCGaaa                                            >  2:33401‑M2/47‑148 (MQ=255)
                                                                                              ttgatgtatcttttttaattgatatgtctattggtattgttgTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTATCGCTATATTCGAAATCAg                                        >  2:167914‑M2/43‑148 (MQ=255)
                                                                                                                         ctattggtattgttgTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACCTCACGCAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTATCGCTATATTCGAAATCAGTTAAATCATACACACCAAAAACCTaga             >  2:86232‑M2/16‑148 (MQ=255)
                                                                                                                                    tttgTGTTGGCTTTTTAATGACATAACTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTATCGCTATATTCGAAATCAGTTAAATCATACACACCAAAAACTTAGAGGTATTTTaaa  <  2:290736‑M2/144‑1 (MQ=255)
                                                                                                                                    gttgTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTATCGCTATATTCGAAATCAGTTAAATCATACACACCAAAAACTTAGAGGTATTTTaaa  <  2:70424‑M2/144‑1 (MQ=255)
                                                                                                                                    gttgTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTATCGCTATATTCGAAATCAGTTAAATCATACACACCAAAAACTTAGAGGTATTTTaaa  <  2:87049‑M2/144‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                               
AAAGGAAGATGACAGTGAGATATAATATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTATCGCTATATTCGAAATCAGTTAAATCATACACACCAAAAACTTAGAGGTATTTTAAA  >  CP000730/1440962‑1441241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.