New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	365029 =	54 (1.160)	8 (0.190)	6/242	5.4	14.4%	intergenic (+39/+66)	nupC/USA300HOU_0334	possible CNT family concentrative nucleoside transporter/SSS family solute:sodium (Na+) symporter
	?	CP000730	365083 =	46 (1.080)					intergenic (+93/+12)	nupC/USA300HOU_0334	possible CNT family concentrative nucleoside transporter/SSS family solute:sodium (Na+) symporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACATAAAAAAGATATAACGGGATTAACAATTTTTGAAAAAGATAAACCATCAACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/365180‑365029 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTAAGTATATAAGCA  >  CP000730/365083‑365212                                                                                                                                                                                                                                                                                            AACATAAAAAAGATATAACGGGATTAACAATTTTTGAAAAAGATAAACCATCAACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGG                                                                                                                                               <  1:308195/141‑1        AAAAGATATAACGGGATTAACAATTTTTGAAAAAGATAAACCATCAACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGG                                                                                                                                        >  1:595990/1‑141         AAAGATATAACGGGATTAACAATTTTTGAAAAAGATAAACCATCAACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTACGTTATGATGCGCTGTTGCTCCAACTTGGTGACGGGG                                                                                                                                       <  2:567112/141‑1          AAGATATAACGGGATTAACAATTTTTGAAAAAGATAAACCATCAACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGT                                                                                                                                      >  2:492531/1‑141                                                                                                              CTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTT                                  >  1:566513/1‑141                                                                                                                 AGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTATCCGTTTTTGAAAGGTATGTTGAAGGTTTATCTTTGTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTt                               >  1:205944/1‑140                                                                                                                 AGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTA                                      >  1:321136/1‑134                                                                                                                 AGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTA                                      <  2:321136/134‑1                                                                                                                  GTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTT                                                                       <  2:287763/100‑1                                                                                                                  GTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTT                                                                       >  1:287763/1‑100                                                                                                                  GTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTT                                                                               <  2:343214/92‑1                                                                                                                  GTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTT                                                                               >  1:343214/1‑92                                                                                                                                              TGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTAAGTATATAAGCA  <  1:227749/141‑1                                                                                                                                              TGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTAAGTATATAAGCA  >  1:127439/1‑141                                                                                                                                                                                                                                                                                            AACATAAAAAAGATATAACGGGATTAACAATTTTTGAAAAAGATAAACCATCAACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/365180‑365029 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTAAGTATATAAGCA  >  CP000730/365083‑365212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.