New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	365029 =	54 (1.160)	8 (0.190)	6/242	5.4	14.4%	intergenic (+39/+66)	nupC/USA300HOU_0334	possible CNT family concentrative nucleoside transporter/SSS family solute:sodium (Na+) symporter
	?	CP000730	365083 =	46 (1.080)					intergenic (+93/+12)	nupC/USA300HOU_0334	possible CNT family concentrative nucleoside transporter/SSS family solute:sodium (Na+) symporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATAAACAAGGAGAAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTA  >  CP000730/364890‑365156                                                                                                                                            |                                                                                                                                aTAAACAAGGAGAAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTaa                                                                                                                                >  2:139405/1‑141 (MQ=255) aTAAACAAGGAGAAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTaa                                                                                                                                <  2:556778/141‑1 (MQ=255)          gagaAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCa                                                                                                                       <  2:583382/141‑1 (MQ=255)          gagaAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCa                                                                                                                       >  1:175060/1‑141 (MQ=255)             aaaaaGTTTCATCCTTTGCAATGAGGCTGTTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATTAATCGAAGTATCTAAATTAAATTCATGGCAAAGCTAAACCCCATCACCa                                                                                                                    >  2:477467/1‑141 (MQ=255)                 aGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGGAAATGCATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGtt                                                                                                                <  2:424831/141‑1 (MQ=255)                   ttGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTgg                                                                                                              >  2:408735/1‑141 (MQ=255)                     gCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGgcg                                                                                                            <  1:408735/141‑1 (MQ=255)                        tCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCaa                                                                                                         >  1:375890/1‑141 (MQ=255)                                aaTGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGcat                                                                                                 <  1:571801/141‑1 (MQ=255)                                  tGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGcatca                                                                                               <  2:16006/141‑1 (MQ=255)                                  tGAGGCTGTTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATTAATCGAAGTATCTAAATTAAATTCATGGCAAAGCTAAACCCCATCACCAAGTTGGCGCAACAGCGcatca                                                                                               <  2:135758/141‑1 (MQ=255)                                      gTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAAc                                                                                           <  1:79132/141‑1 (MQ=255)                                       ttGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAGATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACt                                                                                          <  2:61840/141‑1 (MQ=255)                                       ttGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACt                                                                                          <  2:513506/141‑1 (MQ=255)                                         gCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTa                                                                                        >  1:181171/1‑141 (MQ=255)                                         gCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCAACAAGTTGGCGCAACAGCGCATCATAACTTa                                                                                        >  1:478260/1‑141 (MQ=255)                                          cTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAg                                                                                       >  2:461066/1‑141 (MQ=255)                                           tACTTGTTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCAAAATTAAATTGATGGCAAAGCTAAACCCCGCCACCAAGTTGGCGCAACAGCGCATCATAACTTAGt                                                                                      <  2:58958/141‑1 (MQ=255)                                               tGGTTCAACTCTAGCTTCAATCTTTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACg                                                                                  <  1:498693/141‑1 (MQ=255)                                                ggTTCAACTCTGGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAGTGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCTCCAAGTTGGCGCAACAGCGCATCATAACTTAGTGGCgg                                                                                 <  2:48388/141‑1 (MQ=255)                                                 gTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACggg                                                                                <  1:562808/141‑1 (MQ=255)                                                     aaCTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGttt                                                                            >  2:313424/1‑141 (MQ=255)                                                      aCTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGtttt                                                                           >  1:227239/1‑141 (MQ=255)                                                              ttCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAAc                                                                   >  2:492203/1‑141 (MQ=255)                                                                 aaTCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAAt                                                                >  1:246894/1‑141 (MQ=255)                                                                        tCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACttt                                                         <  1:252905/141‑1 (MQ=255)                                                                           ggATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGt                                                                                      <  2:72055/109‑1 (MQ=255)                                                                           ggATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGt                                                                                      >  1:72055/1‑109 (MQ=255)                                                                           ggATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTc                                                      >  2:230545/1‑141 (MQ=255)                                                                           ggATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTc                                                      >  1:15571/1‑141 (MQ=255)                                                                               caatcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAg                                                  >  1:255286/1‑141 (MQ=255)                                                                                  tcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCg                                               <  1:455352/141‑1 (MQ=255)                                                                                     ttGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGttt                                            >  2:198830/1‑141 (MQ=255)                                                                                       ggCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGttttt                                          <  1:95101/141‑1 (MQ=255)                                                                                       ggCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGttttt                                          <  1:352236/141‑1 (MQ=255)                                                                                          ttAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGaa                                       <  2:25598/141‑1 (MQ=255)                                                                                             gTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatg                                    >  1:404543/1‑141 (MQ=255)                                                                                             gTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatg                                    <  1:15748/141‑1 (MQ=255)                                                                                              tATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgt                                   <  2:267600/141‑1 (MQ=255)                                                                                                ttGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtat                                 >  1:120904/1‑141 (MQ=255)                                                                                                 tGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatg                                >  2:221567/1‑141 (MQ=255)                                                                                                   tAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATAtt                              >  2:518180/1‑141 (MQ=255)                                                                                                           tCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGTCGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGttt                      <  1:188599/141‑1 (MQ=255)                                                                                                            cGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTa                     >  1:385065/1‑141 (MQ=255)                                                                                                               aGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCt                  >  1:186383/1‑141 (MQ=255)                                                                                                                 tACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTCGGCGCAACAGCGCATCATAACTGAGTGACGGGGGTTTATCATACCACTCTACTTTTTCCTAGCCGTTTTTGAACTGTATGTTGATGGTTTAtatat                <  2:175060/141‑5 (MQ=255)                                                                                                                   ccTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCttttt              >  2:462095/1‑141 (MQ=255)                                                                                                                             attCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGt    <  1:335722/141‑1 (MQ=255)                                                                                                                             attCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGt    >  1:347573/1‑141 (MQ=255)                                                                                                                             attCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGt    <  2:186383/141‑1 (MQ=255)                                                                                                                              ttCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGtt   >  2:312455/1‑141 (MQ=255)                                                                                                                              ttCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTCGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGtt   >  2:365262/1‑141 (MQ=255)                                                                                                                               tCATGGCAAAGCTAAACCCCGTAACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTa  >  2:144319/1‑141 (MQ=255)                                                                                                                                            |                                                                                                                                ATAAACAAGGAGAAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTA  >  CP000730/364890‑365156

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.