New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2088038	42 (0.900)	8 (0.200)	8/232	4.3	18.1%	intergenic (+55/+1025)	chp/sak	chemotaxis inhibitory protein CHIPS/staphylokinase
	?	CP000730	= 2088052	36 (0.880)					intergenic (+69/+1011)	chp/sak	chemotaxis inhibitory protein CHIPS/staphylokinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATAAAACATACTTCTTTAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTCCACTATTAGCAATATA  >  CP000730/2087898‑2088176                                                                                                                                             |                                                                                                                                           ataAAACATACTTCTTTAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCa                                                                                                                                            <  2:397534/141‑1 (MQ=255)    aaaCATACTTCTTTAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGAc                                                                                                                                         <  2:422360/141‑1 (MQ=255)          aCTTCTTTAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCa                                                                                                                                   <  2:53564/141‑1 (MQ=255)            ttcttTAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATa                                                                                                                                 >  1:383540/1‑141 (MQ=255)             tcttTAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATaa                                                                                                                                <  1:100025/141‑1 (MQ=255)              cttTAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAAc                                                                                                                               >  2:44449/1‑141 (MQ=255)              cttTAAAAAAGGAGAGTCTAAACCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCaagttatgaaatgt                                                                                                                               <  1:588758/141‑14 (MQ=255)                tgaaaaaaGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACtt                                                                                                                             <  2:518764/139‑1 (MQ=255)                  aaaaaaGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGc                                                                                                                           <  2:234838/141‑1 (MQ=255)                   aaaaaGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGcc                                                                                                                          <  2:469778/141‑1 (MQ=255)                                tAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTtatata                                                                                                             <  1:353592/141‑1 (MQ=255)                                       tcTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATTTTTTTTTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAAtt                                                                                                      >  2:226858/1‑141 (MQ=255)                                       tcTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGAAATTTCATAACTTGTCAAACCTTTATATATCTAGtt                                                                                                      >  2:141824/1‑141 (MQ=255)                                                    atGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACt                                                                                         <  1:141352/141‑1 (MQ=255)                                                         ccTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGAc                                                                                                                                         >  2:78577/1‑88 (MQ=255)                                                         ccTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGAc                                                                                                                                         <  1:78577/88‑1 (MQ=255)                                                            ggAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAGCCTTTATATATCTAATTATCAAACTGCACTAAACTTAc                                                                                 <  1:164442/141‑1 (MQ=255)                                                            ggAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTAc                                                                                 <  1:93741/141‑1 (MQ=255)                                                               aaaaCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCaa                                                                              <  1:293551/141‑1 (MQ=255)                                                                     gtgtaaTATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGc                                                                        <  1:43164/137‑1 (MQ=255)                                                                     aaTGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGc                                                                        <  1:485321/141‑1 (MQ=255)                                                                            atGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCt                                                                 <  2:485110/141‑1 (MQ=255)                                                                              gCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTANCAANCTGCACTAAACTTANCAAAACTGCTTATTCTAt                                                               <  1:554700/141‑1 (MQ=255)                                                                               cATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTTTTTTTTTTTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTACTTATTCTAtt                                                              >  2:586685/1‑141 (MQ=38)                                                                                aTACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTa                                                             >  1:46937/1‑141 (MQ=255)                                                                                          tagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGt                                                   <  1:205205/141‑1 (MQ=255)                                                                                          tagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGt                                                   <  2:438424/141‑1 (MQ=255)                                                                                                  tAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTGTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACctct                                           >  1:287950/1‑141 (MQ=255)                                                                                                   aaaTTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCtctc                                          >  1:215758/1‑141 (MQ=255)                                                                                                      ttAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTg                                       <  1:246022/141‑1 (MQ=255)                                                                                                      ttAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTg                                       <  1:203659/141‑1 (MQ=255)                                                                                                          aaGGTAGATATTTCTTTTTTATTTATTTTTTTGGCAGACATGTCATAATTACCCAAACCTTTATATCTCTAATTATCAAACTGCACCAAACTTACCAAAACTGCTTATTCACTTACCTGCCTTGTATACCTCTCCTTTCGc                                   >  2:502327/1‑141 (MQ=21)                                                                                                          aaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGc                                   >  1:20277/1‑141 (MQ=255)                                                                                                            ggTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCta                                 <  2:547534/141‑1 (MQ=255)                                                                                                              tAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCtata                               >  1:336092/1‑141 (MQ=255)                                                                                                                gATATTTCTTTTTTTTTTTTTTTTTTGGCAGACATTGCATAACTTGCCAAACCTTTATTTATTTAATTATCACACTGCACTAAACTTACCTAAACTGCTTATTCTATTTCCTTCCTTTTCTACCTCTccgcgctcatttag                             >  2:64906/1‑129 (MQ=255)                                                                                                                            ttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTcc                 <  1:141824/141‑1 (MQ=255)                                                                                                                              atataAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTCCAc               >  1:312513/1‑141 (MQ=255)                                                                                                                                 taAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTCCACTAt            >  1:494136/1‑141 (MQ=255)                                                                                                                                    aGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTCCACTATTAg         <  1:575442/141‑1 (MQ=255)                                                                                                                                       tttGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTCCACTATTAGCaa      >  1:507806/1‑141 (MQ=255)                                                                                                                                          ggCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTCCACTATTAGCAatat   >  1:448407/1‑141 (MQ=255)                                                                                                                                           gCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTCCACTATTAGCAAtata  <  2:46004/141‑1 (MQ=255)                                                                                                                                           gCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTCCACTATTAGCAAtata  >  2:42004/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                           ATAAAACATACTTCTTTAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTCCACTATTAGCAATATA  >  CP000730/2087898‑2088176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.