New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2088038	42 (0.900)	8 (0.200)	8/232	4.3	18.1%	intergenic (+55/+1025)	chp/sak	chemotaxis inhibitory protein CHIPS/staphylokinase
	?	CP000730	= 2088052	36 (0.880)					intergenic (+69/+1011)	chp/sak	chemotaxis inhibitory protein CHIPS/staphylokinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTCCACTATTAGCAATATAAGTAATCCATCTA  >  CP000730/2087913‑2088189                                                                                                                                            |                                                                                                                                          tgaaaaaaGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACtt                                                                                                                                          <  2:518764/139‑1 (MQ=255)   aaaaaaGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGc                                                                                                                                        <  2:234838/141‑1 (MQ=255)    aaaaaGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGcc                                                                                                                                       <  2:469778/141‑1 (MQ=255)                 tAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTtatata                                                                                                                          <  1:353592/141‑1 (MQ=255)                        tcTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATTTTTTTTTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAAtt                                                                                                                   >  2:226858/1‑141 (MQ=255)                        tcTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGAAATTTCATAACTTGTCAAACCTTTATATATCTAGtt                                                                                                                   >  2:141824/1‑141 (MQ=255)                                     atGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACt                                                                                                      <  1:141352/141‑1 (MQ=255)                                             ggAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAGCCTTTATATATCTAATTATCAAACTGCACTAAACTTAc                                                                                              <  1:164442/141‑1 (MQ=255)                                             ggAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTAc                                                                                              <  1:93741/141‑1 (MQ=255)                                                aaaaCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCaa                                                                                           <  1:293551/141‑1 (MQ=255)                                                      gtgtaaTATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGc                                                                                     <  1:43164/137‑1 (MQ=255)                                                      aaTGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGc                                                                                     <  1:485321/141‑1 (MQ=255)                                                             atGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCt                                                                              <  2:485110/141‑1 (MQ=255)                                                               gCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTANCAANCTGCACTAAACTTANCAAAACTGCTTATTCTAt                                                                            <  1:554700/141‑1 (MQ=255)                                                                cATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTTTTTTTTTTTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTACTTATTCTAtt                                                                           >  2:586685/1‑141 (MQ=38)                                                                 aTACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTa                                                                          >  1:46937/1‑141 (MQ=255)                                                                           tagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGt                                                                <  1:205205/141‑1 (MQ=255)                                                                           tagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGt                                                                <  2:438424/141‑1 (MQ=255)                                                                                   tAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTGTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACctct                                                        >  1:287950/1‑141 (MQ=255)                                                                                    aaaTTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCtctc                                                       >  1:215758/1‑141 (MQ=255)                                                                                       ttAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTg                                                    <  1:203659/141‑1 (MQ=255)                                                                                       ttAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTg                                                    <  1:246022/141‑1 (MQ=255)                                                                                           aaGGTAGATATTTCTTTTTTATTTATTTTTTTGGCAGACATGTCATAATTACCCAAACCTTTATATCTCTAATTATCAAACTGCACCAAACTTACCAAAACTGCTTATTCACTTACCTGCCTTGTATACCTCTCCTTTCGc                                                >  2:502327/1‑141 (MQ=21)                                                                                           aaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGc                                                >  1:20277/1‑141 (MQ=255)                                                                                             ggTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCta                                              <  2:547534/141‑1 (MQ=255)                                                                                               tAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCtata                                            >  1:336092/1‑141 (MQ=255)                                                                                                 gATATTTCTTTTTTTTTTTTTTTTTTGGCAGACATTGCATAACTTGCCAAACCTTTATTTATTTAATTATCACACTGCACTAAACTTACCTAAACTGCTTATTCTATTTCCTTCCTTTTCTACCTCTccgcgctcatttag                                          >  2:64906/1‑129 (MQ=255)                                                                                                             ttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTcc                              <  1:141824/141‑1 (MQ=255)                                                                                                               atataAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTCCAc                            >  1:312513/1‑141 (MQ=255)                                                                                                                  taAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTCCACTAt                         >  1:494136/1‑141 (MQ=255)                                                                                                                     aGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTCCACTATTAg                      <  1:575442/141‑1 (MQ=255)                                                                                                                        tttGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTCCACTATTAGCaa                   >  1:507806/1‑141 (MQ=255)                                                                                                                           ggCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTCCACTATTAGCAatat                >  1:448407/1‑141 (MQ=255)                                                                                                                            gCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTCCACTATTAGCAAtata               <  2:46004/141‑1 (MQ=255)                                                                                                                            gCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTCCACTATTAGCAAtata               >  2:42004/1‑141 (MQ=255)                                                                                                                                  aTTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAAc                                                                                        >  1:348876/1‑62 (MQ=255)                                                                                                                                  aTTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAAc                                                                                        <  2:348876/62‑1 (MQ=255)                                                                                                                                     tCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTCCACTATTAGCAATATAAGTAATCCa      >  1:212814/1‑141 (MQ=255)                                                                                                                                       aTAACCAGCCAAACCTGTATATATCCAATTATCAAACTGCACTAAACTGACCAAAACTGCTCATTCTATTACCTGCCTTCTCTACCGCTCCTGTCGCTATACAACGACGTTGTCCACTATTAGCAACATAATTAATCCATc    >  2:64019/1‑141 (MQ=18)                                                                                                                                         aaCTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTCCACTATTAGCAATATAAGTAATCCATCta  <  2:312513/141‑1 (MQ=255)                                                                                                                                            |                                                                                                                                          TTAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTCCACTATTAGCAATATAAGTAATCCATCTA  >  CP000730/2087913‑2088189

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.