New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1097237 =	43 (0.920)	8 (0.190)	8/246	4.6	15.6%	intergenic (+11/‑122)	cydB/ktrC	cytochrome d ubiquinol oxidase subunit II/possible Trk family potassium (K+) transporter, NAD+ binding protein
	?	CP000730	1097291 =	47 (1.090)					intergenic (+65/‑68)	cydB/ktrC	cytochrome d ubiquinol oxidase subunit II/possible Trk family potassium (K+) transporter, NAD+ binding protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCCATCGTTAATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTAGTCATCGGTCTAGGTCGTTTTGGAGGTAGTATCGTTCGTGAGTTGAATGCATTA  >  CP000730/1097156‑1097430                                                                                                                                         |                                                                                                                                            ttCCATCGTTAATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCAtt                                                                                                                                        >  1:3712/1‑141 (MQ=255)  tCCATCGTTAATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCAttt                                                                                                                                       <  1:394215/141‑1 (MQ=255)          tAATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATaataat                                                                                                                               >  1:425547/1‑141 (MQ=255)          tAATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATaataat                                                                                                                               >  1:108557/1‑141 (MQ=255)             tattattatTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAAtttt                                                                                                                            >  1:451168/1‑141 (MQ=255)              attattattAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTa                                                                                                                           >  1:306787/1‑141 (MQ=255)                 attattaAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAAt                                                                                                                        >  1:158214/1‑141 (MQ=255)                 attattaAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAAt                                                                                                                        >  1:453940/1‑141 (MQ=255)                  ttattaAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAAtt                                                                                                                       <  1:268413/141‑1 (MQ=255)                         gATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATAttt                                                                                                                <  2:593597/141‑1 (MQ=255)                             attTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCaa                                                                                                            >  2:497110/1‑141 (MQ=255)                                  ttttCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAAt                                                                                                       >  2:498656/1‑141 (MQ=255)                                  ttttCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAAt                                                                                                       >  1:58399/1‑141 (MQ=255)                                  ttttCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAAt                                                                                                       >  1:58394/1‑141 (MQ=255)                                     tCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATtga                                                                                                    <  1:582988/141‑1 (MQ=255)                                      cGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATtgat                                                                                                   <  2:592510/141‑1 (MQ=255)                                      cGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATtgat                                                                                                   <  2:592512/141‑1 (MQ=255)                                       gACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATtgatg                                                                                                  >  1:284636/1‑141 (MQ=255)                                        aCAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATtgatga                                                                                                 >  2:217001/1‑141 (MQ=255)                                           aaGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGaaaa                                                                                              >  1:57275/1‑141 (MQ=255)                                               atatGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCAt                                                                                          <  1:272763/141‑1 (MQ=255)                                                     tGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGCAAATCATTTAATg                                                                                    >  2:502515/1‑141 (MQ=255)                                                     tGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATg                                                                                    >  1:588065/1‑141 (MQ=255)                                                     tGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTAATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGACAATCATTTAATg                                                                                    >  2:326820/1‑141 (MQ=255)                                                          gaaagaaaTCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAATTTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAgg                                                                                >  2:562083/1‑141 (MQ=255)                                                          gaaagaaaTCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAggg                                                                               <  1:168732/141‑1 (MQ=255)                                                          gaaagaaaTCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAggg                                                                               <  1:372464/141‑1 (MQ=255)                                                           aaagaaaTCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGc                                                                              <  1:264372/141‑1 (MQ=255)                                                            aagaaaTCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCg                                                                             <  2:425547/141‑1 (MQ=255)                                                                        gTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTaaa                                                                 <  2:453940/141‑1 (MQ=255)                                                                                 gtACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTAc                                                                                                                                             >  2:210577/2‑56 (MQ=255)                                                                                 gtACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTAc                                                                                                                                             <  1:210577/55‑1 (MQ=255)                                                                                 aTACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTa                                                        >  2:353546/1‑141 (MQ=255)                                                                                 aTACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTa                                                        >  1:344357/1‑141 (MQ=255)                                                                                     ctcAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTAGTCa                                                    <  2:543562/139‑1 (MQ=255)                                                                                             tCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTAGTCATCGGTCTa                                            <  2:535666/141‑1 (MQ=255)                                                                                              cATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTAGTCATCGGTCTAg                                           <  2:347891/141‑1 (MQ=255)                                                                                              cATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTAGTCATCGGTCTAg                                           <  2:588065/141‑1 (MQ=255)                                                                                                 ttACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTAGTCATCGGTCTAGGTc                                        <  2:1445/141‑1 (MQ=255)                                                                                                 ttACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTAGTCATCGGTCTAGGTc                                        <  1:535570/141‑1 (MQ=255)                                                                                                 ttACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTAGTCATCGGTCTAGGTc                                        <  2:306787/141‑1 (MQ=255)                                                                                                    cTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTAGTCATCGGTCTAGGTCGtt                                     >  2:206697/1‑141 (MQ=255)                                                                                                      tGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTAGTCATCGGTCTAGGTCGtttt                                   >  1:548249/1‑141 (MQ=255)                                                                                                             cTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGc                                                                              <  1:278584/91‑1 (MQ=255)                                                                                                             cTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGc                                                                              >  2:278584/1‑91 (MQ=255)                                                                                                             cTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGAATGGGTAAAGAATATGTAGTCATCGGTCTAGGTCGTTTTGGAGgta                            <  1:497110/141‑1 (MQ=255)                                                                                                                 aTTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTAGTCATCGGTCTAGGTCGTTTTGGAGGTAGTAt                        <  2:315645/141‑1 (MQ=255)                                                                                                                  gcaagtaaatgaaaGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTAGTCATCGGTCTAGGTCGTTTTGGAGGTAGTAt                        <  1:55189/128‑1 (MQ=255)                                                                                                                     aGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTAGTCATCGGTCTAGGTCGTTTTGGAGGTAGTAtcgtt                    >  1:443223/1‑141 (MQ=255)                                                                                                                         aa‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTAGTCATCGGTCTAGGTCGTTTTGGAGGTAGTATCGTTCGTg                >  2:171611/1‑141 (MQ=255)                                                                                                                               aGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTAGTCATCGGTCTAGGTCGTTTTGGAGGTAGTATCGTTCGTGAGTTg           <  1:92189/141‑1 (MQ=255)                                                                                                                                      gTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTAGTCATCGGTCTAGGTCGTTTTGGAGGTAGTATCGTTCGTGAGTTGAATGCAt    <  1:218188/141‑1 (MQ=255)                                                                                                                                      gTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTAGTCATCGGTCTAGGTCGTTTTGGAGGTAGTATCGTTCGTGAGTTGAATGCAt    <  1:143496/141‑1 (MQ=255)                                                                                                                                        aCTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTAGTCATCGGTCTAGGTCGTTTTGGAGGTAGTATCGTTCGTGAGTTGAATGCATTa  <  2:324988/141‑1 (MQ=255)                                                                                                                                        aCTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTAGTCATCGGTCTAGGTCGTTTTGGAGGTAGTATCGTTCGTGAGTTGAATGCATTa  <  2:284636/141‑1 (MQ=255)                                                                                                                                         |                                                                                                                                            TTCCATCGTTAATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTAGTCATCGGTCTAGGTCGTTTTGGAGGTAGTATCGTTCGTGAGTTGAATGCATTA  >  CP000730/1097156‑1097430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.