New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 533277 =93 (1.160)6 (0.080) 6/250 10.3 6.4% intergenic (+2848/‑2877) veg/rplY hypothetical protein/ribosomal protein L25
?CP000730 = 533297 88 (1.180)intergenic (+2868/‑2857) veg/rplY hypothetical protein/ribosomal protein L25
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTTTCTTACTTCAAAAATACGAGCATCATTCAAACGCAATTTTTATCAGCAATGAATCAATAATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAAAAAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/533425‑533277
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaaaaaacATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTACATCGCTAAATATAAAATTGATTAAGCTTCTTCTGAATCTTCTGATGTAGCGTTTTTATC  <  CP000730/533297‑533158
                                                                                                                                                                                                                                                                                                 
TTTTTCTTACTTAAAAAATACGATCATCATTCAAACGCAATTTTTATCAGCAATGAATCAATAATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACT                                                                                                                                                      <  2:753511/141‑1
 TTTTCTTACTTCAAAAATACGAGCATCATTCAAACGCAATTTTTATCAGCAATGAATCAATAATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTA                                                                                                                                                     >  1:887276/1‑141
   TTCTTACTTCAAAAATACGAGCATCATTCAAACGCAATTTTTATCAGCAATGAATCAATAATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAAA                                                                                                                                                   <  1:968663/141‑1
   TTCTTACTTCAAAAATACGAGCATCATTCAAACGCAATTTTTATCAGCAATGAATCAATAATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAAA                                                                                                                                                   >  2:422303/1‑141
       TACTTCAAAAATACGAGCATCATTCAAACGCAATTTTTATCAGCAATGAATCAATAATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAAAAAAA                                                                                                                                               >  2:639881/1‑141
       TACTTCAAAAATACGAGCATCATTCAAACGCAATTTTTATCAGCAATGAATCAATAATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAAAAAAA                                                                                                                                               >  1:757879/1‑141
                   ACGAGCATCATTCAAACGCAATTTTTATCAGCAATGAATCAATAATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAA                                                                                                                                                    <  1:693148/124‑1
                   ACGAGCATCATTCAAACGCAATTTTTATCAGCAATGAATCAATAATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAA                                                                                                                                                    >  2:693148/1‑124
                   ACGAGCATCATTCAAACGCAATTTTTATCAGCAATAAATCAATAATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAAAAAAACATTAATACAAA                                                                                                                                   <  2:403108/141‑1
                                                               ATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAAAAAAACATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATC                                                                                       >  2:736780/1‑141
                                                                 TTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAAAAAAACATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGAC                                                                                             >  1:846200/1‑133
                                                                 TTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAAAAAAACATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGAC                                                                                             <  2:846200/133‑1
                                                                                ATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAAAAAAACATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATTATATCATCTTTTTGTAA                                                                      >  1:783339/1‑141
                                                                                                                                   AATACAAACTAAAAAAACATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTACATCGCTAAATATAAAATTGATTAAGCTTCTTCTGAATCTTCT                   >  2:909668/1‑141
                                                                                                                                             AAAAAAACATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTACATCGCTAAATATAAAATTGATTAAGCTTCTTCTGAATCTTCTGATGTAGCGT         >  1:281612/1‑141
                                                                                                                                              AAAAAACATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTACATCGCTAAATATAAAATTGATTAAGCTTCTTCTGAATCTTCTGATGTAGCGTT        >  2:995852/1‑141
                                                                                                                                               AAAAACATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTACATCGCTAAATATAAAATTGATTAAGCTTCTTCTGAATCTTCTGATGTAGCGTTT       >  2:220021/1‑141
                                                                                                                                                AAAACATTAATACAAACTAAAAATACTGCCGACAACGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTACATCGCTAAATATAAAATTGATTAAGCTTCTTCTGAATCTTCTGATGTAGCGTTTT      >  2:785708/1‑141
                                                                                                                                                 AAACATTAATACAAACTAAAAAAACTGCCGTCAAAGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTACATCGCTAAATATAAAATTGATTAAGCTTCTTCTGAATCTTCTGATGTAGCGTTTTT     <  1:782852/141‑1
                                                                                                                                                 AAACATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTA                                                              <  1:93722/84‑1
                                                                                                                                                 AAACATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTA                                                              >  2:93722/1‑84
                                                                                                                                                  AACATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTACATCGCTAAATATAAAATTGATTAAGCTTCTTCTGAATCTTCTGATGTAGCGTTTTTA    >  2:105839/1‑141
                                                                                                                                                    CATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTACATCGCTAAATATAAAATTGATTAAGCTTCTTCTGAATCTTCTGATGTAGCGTTTTTATC  <  2:655653/141‑1
                                                                                                                                                                                                                                                                                                 
TTTTTCTTACTTCAAAAATACGAGCATCATTCAAACGCAATTTTTATCAGCAATGAATCAATAATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAAAAAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/533425‑533277
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaaaaaacATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTACATCGCTAAATATAAAATTGATTAAGCTTCTTCTGAATCTTCTGATGTAGCGTTTTTATC  <  CP000730/533297‑533158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.