| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2067929 = | 70 (0.880) | 3 (0.040) | 3/248 | 12.5 | 4.2% | intergenic (+42/+153) | ppaC/USA300HOU_1922 | inorganic diphosphatase/hypothetical protein |
| ? | CP000730 | 2067974 = | 71 (0.970) | intergenic (+87/+108) | ppaC/USA300HOU_1922 | inorganic diphosphatase/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACAAAAGGGGAATTGTATAGAAATCACTAATCTGTGGGTTAGGGTAGCTAAAGGAATAAAAACTACTATTGAAAAAGGGTTGTAAATTAGTCAAACGTAAATAAAAAACAGTTCATTGAAAGTGAAATAAATTCTACTTTAATGAACTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2068079‑2067929‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgaactgttTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGCGATGTT > CP000730/2067974‑2068110 ACAAAAGGGGAATTGTATAGAAATCACTAATCTGTGGGTTAGGGTAGCTAAAGGAATAAAAACTACTATTGAAAAAGGGTTGTAAATTAGTCAAACGTAAATAAAAAACAGTTCATTGAAAGTGAAATAAATTCTACTTTA < 2:79815/141‑1 AGGGGAATTGTATAGAAATCACTAATCTGTGGGTTATGGTAGCTAAAGGAATAAAAACTACTATTGAAAAAGGGTTGTAAATTAGTCAAACGTAAATAAAAAACAGTTCATTGAAAGTGAAATAAATTCTACTTTA < 1:694414/136‑1 AGGGGAATTGTATAGAAATCACTAATCTGTGGGTTATGGTAGCTAAAGGAATAAAAACTACTATTGAAAAAGGGTTGTAAATTAGTCAAACGTAAATAAAAAACAGTTCATTGAAAGTGAAATAAATTCTACTTTA > 2:694414/1‑136 ggaAATTGTATAGAAATCAAAAATCTGTGGGTTAGGGTAGCTAAAGGAATAAAAAAAAAAAAAGAAAAAGGGTTGTAAATTAGTCAAACGTAAATAAAAAACAGTTCATTGAAAGTGAAATAAATTCTACTTTAATGAACT < 2:3849/138‑1 GGAATTGTATAGAAATCACTAATCTGTGGGTTAGGGTAGCTAAAGGAATAAAAACTACTATTGAAAAAGGGTTGTAAATTAGTCAAACGTAAATAAAAAACAGTTCATTGAAAGTGAAATAAATTCTACTTTAATGAACTG < 2:739376/141‑1 GGAATTGTATAGAAATCACTAATCTGTGGGTTAGGGTAGCTAAAGGAATAAAAACTACTATTGAAAAAGGGTTGTAAATTAGTCAAACGTAAATAAAAAACAGTTCATTGAAAGTGAAATAAATTCTACTTTAATGAACTG < 2:268533/141‑1 GGAATTGTATAGAAATCACTAATCTGTGGGTTAGGGTAGCTAAAGGAATAAAAACTACTATTGAAAAAGGGTTGTAAATTAGTCAAACGTAAATAAAAAACAGTTCATTGAAAGTGAAATAAATTCTACTTTAATGAACTG < 2:739406/141‑1 AACAGTTCATTGAAAGTGAAATAAATTCTACTTTAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATT > 1:634503/1‑141 GTTCATTGAAAGTGAAATAAATTCTACTTTAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCC > 1:614354/1‑141 TTCATTGAAAGTGAAATAAATTCTACTTTAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCT > 1:371396/1‑141 AATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTG < 2:125174/141‑1 ATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGC > 1:555430/1‑141 TGAACTGTTTTTTATTTATTTTTTACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGCG > 1:352032/1‑141 TGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGCG > 2:185130/1‑141 AACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGCGAT < 1:756273/141‑1 ACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTTTTTTTTTTTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGCGATG > 2:670544/1‑141 ACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTATCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGCGATG > 2:779431/1‑141 CTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGCGATGT < 1:70812/141‑1 CTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGCGATGT < 2:715379/141‑1 TGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTTTTTTTTTTTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGCGATGTT > 2:663016/1‑141 TGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTTCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGCGATGTT > 1:532174/1‑141 ACAAAAGGGGAATTGTATAGAAATCACTAATCTGTGGGTTAGGGTAGCTAAAGGAATAAAAACTACTATTGAAAAAGGGTTGTAAATTAGTCAAACGTAAATAAAAAACAGTTCATTGAAAGTGAAATAAATTCTACTTTAATGAACTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2068079‑2067929‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgaactgttTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGCGATGTT > CP000730/2067974‑2068110 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |