| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 760039 | 79 (0.890) | 10 (0.130) | 8/230 | NT | 12.2% | intergenic (+13/+114) | cydC/USA300HOU_0709 | ABC superfamily ATP binding cassette transporter, ABC protein/possible MarR family transcriptional regulator |
| ? | CP000730 | = 760055 | 74 (0.940) | intergenic (+29/+98) | cydC/USA300HOU_0709 | ABC superfamily ATP binding cassette transporter, ABC protein/possible MarR family transcriptional regulator | |||||
GCTACACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/759886‑760039‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaactgcttgaAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGGTCTCAA < CP000730/760055‑759917 GCTACACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAA > 2:653176/1‑141GCTACACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAA > 1:852812/1‑141GCTACACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAA > 1:341099/1‑141GCTACACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAA > 2:928668/1‑141GCTACACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAA > 1:396223/1‑141GCTACACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAA > 1:832354/1‑141 CACGATTTAACTTTATAGTCACCGTAAGATACGAGCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAAC > 2:273664/1‑141 ACGATTTAACTTTTTTGTCATGTTTTGAGACCAAAATTGTGAGGATAAATGGTAAAATAGTTGAAAAGGGAATCTTTCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTTAATAAAAAAAAAAAAAAAACT < 2:309796/141‑1 ACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACT < 2:244075/141‑1 ACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACT < 2:965021/141‑1 GATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGC > 1:484169/1‑141 CGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAACCTCTCAACAATTACTAGCTAATAAAAATGATTTATGGAATCTGCTTCAATATACTGAATAAAAAAACTGCTTGAAAGGTTTCTTAGCC < 1:432252/141‑1 GAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAA < 2:192858/141‑1 GACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGC < 2:26619/141‑1 ACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCA < 1:1011052/141‑1 ACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCA < 1:548477/141‑1 CCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAG < 2:994756/141‑1 TGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAA < 1:758799/130‑1 TGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAA > 2:758799/1‑130 TTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTA > 1:114827/1‑141 ATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGTACCTTGATTAGCTAGTAATTGTTGATCGTTTCCCTTTTCAACTATTTTACCAT > 2:785752/1‑141 AAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAAT < 1:80669/141‑1 AAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAAT > 2:759807/1‑141 CTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGG < 1:356910/141‑1 CTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATAAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGG > 2:571519/1‑141 GCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAAaaaaaaaa < 2:518290/141‑9 GCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGGTC < 2:957298/141‑1 CTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGGTCT > 2:587247/1‑141 TTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGGTCTC > 2:837733/1‑141 GAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCCCAATGATGGTCTCAA < 2:209314/141‑1 GCTACACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/759886‑760039‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaactgcttgaAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGGTCTCAA < CP000730/760055‑759917 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |