New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 885389	50 (0.560)	5 (0.060)	4/232	NT	9.3%	intergenic (+18/+55)	gpmA1/yisU	phosphoglycerate mutase/LysE family L‑lysine exporter
	?	CP000730	= 885408	52 (0.650)					intergenic (+37/+36)	gpmA1/yisU	phosphoglycerate mutase/LysE family L‑lysine exporter

TGGGAGTATTTTTAAGATATTGCCTTAAACTAGATGAAGCATTAAAGCATAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/885238‑885389 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcgttatacaAAAGACATACTTGTGTC‑TATGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATATTCAAATTTCAGGATATTACAATTACCGATATTATGCTTTAATGCTTCATCT  <  CP000730/885408‑885269                                                                                                                                                                                                                                                                                                       TGGGAGTATTTTTAAGATATTGCCTTAAACTAGATGAAGCATTAAAGCATAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAA                                                                                                                                                          <  2:279896/141‑1     AGTATTTTTAAGATATTGCCTTAAACTAGATGAAGCATTAAAGCATAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCG                                                                                                                                                      <  2:214558/141‑1        ATTTTTAAGATATTGCCTTAAACTAGATGAAGCATTAAAGCATAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTA                                                                                                                                                   >  1:611765/1‑141            TTAAGATATTGCCTTAAACTAGATGAAGCATTAAAGCATAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCTTTATACA                                                                                                                                               <  1:858156/141‑1            TTAAGATATTGCCTTAAACTAGATGAAGCATTAAAGCATAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACA                                                                                                                                               <  1:336474/141‑1            TTAAGATATTGCCTTAAACTAGATGAAGCATTAAAGCATAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACA                                                                                                                                               <  2:744713/141‑1                       CCTTAAACTAGATGAAGCATTAAAGCATAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACAAAAGACATACT                                                                                                                                    <  1:517236/141‑1                       CCTTAAACTAGATGAAGCATTAAAGCATAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACAAAAGACATACT                                                                                                                                    <  1:192785/141‑1                                AGATGAAGCATTAAAGCATAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACAAAAGACATACTTGTGTC‑TAT                                                                                                                          <  2:384428/141‑1                                           TAAAGCATAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACAAAAGACATACTTGTGTC‑TATGTATAACGCTT                                                                                                               <  2:233736/141‑1                                                                                                                                     AATAAATAAAGCGTTATAC‑ATAGACACAAGTATGTCTTTTGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATATTCAAATTTCAGGATATTACAATTACCGATATT                     >  1:420072/1‑141                                                                                                                                            AAAGCGTTATACAAAAGACATACTTGTGTC‑TATGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATATTCAAATTTCAGGATATTACAATTACCGATATTATGCTTT              <  2:838675/141‑1                                                                                                                                            AAAGCGTTATACAAAAGACATACTTGTGTC‑TATGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATATTCAAATTTCAGGATATTACAATTACCGATATTATGCTTT              >  1:171107/1‑141                                                                                                                                            AAAGCGTGATACAAAAGACATACTTGTGTC‑TATGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATATTCAAATTTCAGGATATTACAATTACCGATATTATGCTTT              >  1:861038/1‑141                                                                                                                                              AGCGTTATACAAAAGACATACTTGTGTC‑TATGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATATTCAAATTTCAGGATATTACAATTACCGATATTATGCTTTAA            >  1:600750/1‑141                                                                                                                                                   TATACAAAAGACATACTTGTGTC‑TATGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATCTTCAAATTTCAGGATATTACAATTACCGATATTATGCTTTAATGCTT       >  1:117008/1‑141                                                                                                                                                   TATACAAAAGACATACTTGTGTC‑TATGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATATTCAAATTTCAGGATATTACAATTACCGATATTATGCTTTAATGCTT       >  2:251907/1‑141                                                                                                                                                        AAAAGACATACTTGTGTC‑TATGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATATTCAAATTTCAGGATATTACAATTACCGATATTATGCTTTAATGCTTCATCT  <  2:509538/141‑1                                                                                                                                                        AAAAGACATACTTGTGTC‑TATGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATATTCAAATTTCAGGATATTACAATTACCGATATTATGCTTTAATGCTTCATCT  <  1:201736/141‑1                                                                                                                                                                                                                                                                                                       TGGGAGTATTTTTAAGATATTGCCTTAAACTAGATGAAGCATTAAAGCATAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/885238‑885389 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcgttatacaAAAGACATACTTGTGTC‑TATGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATATTCAAATTTCAGGATATTACAATTACCGATATTATGCTTTAATGCTTCATCT  <  CP000730/885408‑885269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.