| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1129293 = | 77 (0.870) | 6 (0.070) | 5/242 | NT | 7.8% | intergenic (+71/‑256) | USA300HOU_1055/USA300HOU_1056 | hypothetical membrane protein/hypothetical protein |
| ? | CP000730 | 1129331 = | 69 (0.830) | intergenic (+109/‑218) | USA300HOU_1055/USA300HOU_1056 | hypothetical membrane protein/hypothetical protein | |||||
CAGGCATAATTTTAACGTCATAAAGATTTTCCCTACACTCTATATCATAACCTATCTTTATGTTTTCAGGTTGAATTTCATTATTAAGATTAAAATATGTATAAAAAAATGGACAGTT‑AAGGTATCAAATGAATACCATCAACTGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1129440‑1129293‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aactgtccATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTATGACGTTAAAATTATGCCTGAAGATGATTTTGTTTTATCGAAACGAC > CP000730/1129331‑1129467 CAGGCATAATTTTAACGTCATAAAGATTTTCCCTACACTCTATATCATAACCTATCTTTATGTTTTCAGGTTGAATTTCATTATTAAGATTAAAATATGTATAAAAAAATGGACAGTT‑AAGGTATCAAATGAATACCATCA < 1:637754/141‑1CAGGCATAATTTTAACGTCATAAAGATTTTCCCTACACTCTATATCATAACCTATCTTTATGTTTTCAGGTTGAATTTCATTATTAAGATTAAAATATGTATAAAAAAATGGACAGTT‑AAGGTATCAAATGAATACCATCA > 2:775503/1‑141CAGGCATAATTTTAACGTCATAAAGATTTTCCCTACACTCTATATCATAACCTATCTTTATGTTTTCAGGTTGAATTTCATTATTAAGATTAAAAAAAAAAAAAAAAAATGGACAGTT‑AAGGTATCAAATGAATACCATCA < 2:207996/141‑1 ATAATTTTAACGTCATAAAGATTTTCCCTACACTCTATATCATAACCTATCTTTATGTTTTCAGGTTGAATTTCATTATTAAGATTAAAATATGTATAAAAAAATGGACAGTT‑AAGGTATCAAATGAATACCATCAACTGT < 1:651002/141‑1 TAATTTTAACGTCATAAAGATTTTCCCTACACTCTATATCATAACCTATCTTTATGTTTTCAGGTTGAATTTCATTATTAAGATTAAAATATGTATAAAAAAATGGACAGTT‑AAGGTATCAAATGAATACCATCAACTGTC > 2:693260/1‑141 GTCATAAAGATTTTCCCTACACTCTATAACATAACCTATCTTTATGTTTTCAGGTTGAATTTCATTATTAAGATTAAAATATGTATAAAAAAATGGACAGTTGATGGTATTCATTTGATACC‑TTAACTGTCCATTTTTTTA < 1:171783/141‑1 GGACAGTT‑AAGGTATCAAATGAATACCATCAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTATGACGTTAAAATT > 1:1045427/1‑141 CAGTT‑AAGGTATCAAATGAATACCATCAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTATGACGTTAAAATTATG > 1:755464/1‑141 GTT‑AAGGTATCAAATGAATACCATCAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTATGACGTTAAAATTATGCC > 2:95523/1‑141 GTT‑AAGGTATCAAATGAATACCATCAACTGTCCATTTTTTTATACAGATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGATTATGATATAGAGTGTAGGGAAAATCTTAATGACGTTAAAATTATGac > 2:1084428/1‑139 AGGTATCAAATGAATACCATCAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTATGACGTTAAAATTATGCCTGAA > 2:992328/1‑141 TGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTATGACGTTAAAATTATGCCTGAAGATGATTTTGTTTTATCGAAACGA < 2:1043472/141‑1 GTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTATGACGTTAAAATTATGCCTGAAGATGATTTTGTTTTATCGAAACGAC > 1:273427/1‑141 CAGGCATAATTTTAACGTCATAAAGATTTTCCCTACACTCTATATCATAACCTATCTTTATGTTTTCAGGTTGAATTTCATTATTAAGATTAAAATATGTATAAAAAAATGGACAGTT‑AAGGTATCAAATGAATACCATCAACTGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1129440‑1129293‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aactgtccATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTATGACGTTAAAATTATGCCTGAAGATGATTTTGTTTTATCGAAACGAC > CP000730/1129331‑1129467 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |