| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1709558 | 55 (0.620) | 6 (0.070) | 4/244 | NT | 10.2% | intergenic (‑97/+365) | sem/USA300HOU_1604 | enterotoxin/hypothetical protein |
| ? | CP000730 | = 1709579 | 54 (0.640) | intergenic (‑118/+344) | sem/USA300HOU_1604 | enterotoxin/hypothetical protein | |||||
AATATTCGATTGCACTCGCTGAATTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1709416‑1709558‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagaaccACTACATAATAAACCATAAGCGGTTCTTTATCATTTATGTCTCGCTCTCAAATGTAAATTAATAATTGTTTTGGGGGAGTTTGAAGTTAAATATTTAACAGGATTTATTTTAATATTATTGTTAGAAGGAATTTTTACA < CP000730/1709579‑1709441 AATATTCGATTGCACTCGCTGAATTTGTAAAATTTCCTTCTAACATTAATATTAAAATAAATCCTGTTAAATATTTAACTTCAGACTCCCCCAAAACAGTTATTAATTTACATTTGGGTGCGAGACATAAATGATATAGAA < 2:301023/141‑1AATATTCGATTGCACTCGCTGAATTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAA < 2:739933/141‑1AATATTCGATTGCACTCGCTGAATTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAAACCCAATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAA < 1:1063264/141‑1 TATTCGATTGCACTCGCTGAATTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACC > 1:407235/1‑141 TATTCGATTGCACTCGCTGAATTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACC > 1:407236/1‑141 TTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCACTACATAATAAACCATAAGCG < 1:1042393/141‑1 TTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCACTACATAATAAACCATAAGCG < 2:198376/141‑1 GTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCACTACATAATAAACCATAAGCGGT < 2:464388/141‑1 TCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCACTACATAATAAACCATAAGCGGTTCTTTATC < 2:200952/141‑1 TCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCACTACATAATAAACCATAAGCGGTTCTTTATC < 2:452908/141‑1 CCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCACTACATAATAAACCATAAGCGGTTCTTTATCA < 2:2584/141‑1 ACCACTACATAATAAACCATAAGCGGTTCTTTATCATTTATGTCTCGCTCTCAAATGTAAATTAATAATTGTTTTGGGGGAGTTTGAAGTTAAATATTTAACAGGATTTATTTTAATATTATTGTTAGAAGGAATTTTTAC < 1:994716/141‑1 CCACTACATAATAAACCATAAGCGGTTCTTTATCATTTATGTCTCGCTCTCAAATGTAAATTAATAATTGTTTTGGGGGAGTTTGAAGTTAAATATTTAACAGGATTTATTTTAATATTATTGTTAGAAGGAATTTTTACA > 1:733110/1‑141 CCACTACATAATAAACCATAAGCGGTTCTTTATCATTTATGTCTCGCTCTCAAATGTAAATTAATAATTGTTGTGGGGGAGTTTGAAGTTAAATATTTAACAGGATTTATTTTAATATTATTGTTAGAAGGAATTTTTACA > 1:733094/1‑141 AATATTCGATTGCACTCGCTGAATTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1709416‑1709558‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagaaccACTACATAATAAACCATAAGCGGTTCTTTATCATTTATGTCTCGCTCTCAAATGTAAATTAATAATTGTTTTGGGGGAGTTTGAAGTTAAATATTTAACAGGATTTATTTTAATATTATTGTTAGAAGGAATTTTTACA < CP000730/1709579‑1709441 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |