New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1709558	55 (0.620)	6 (0.070)	4/244	NT	10.2%	intergenic (‑97/+365)	sem/USA300HOU_1604	enterotoxin/hypothetical protein
	?	CP000730	= 1709579	54 (0.640)					intergenic (‑118/+344)	sem/USA300HOU_1604	enterotoxin/hypothetical protein

TATTCGATTGCACTCGCTGAATTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAATTATTAGTTGAGTTATATCAACCAATACAGTGTATACCTAAAAATT  >  CP000730/1709418‑1709698                                                                                                                                             |                                                                                                                                             tatTCGATTGCACTCGCTGAATTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACC                                                                                                                                              >  1:407236‑M1/1‑141 (MQ=255) tatTCGATTGCACTCGCTGAATTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACC                                                                                                                                              >  1:407235‑M1/1‑141 (MQ=255)  atTCGATTGCACTCGCTGAATTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCg                                                                                                                                             <  1:57308/141‑1 (MQ=255)    tCGATTGCACTCGCTGAATTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCt                                                                                                                                           <  1:564311/141‑1 (MQ=255)    tCGATTGCACTCGCTGAATTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCt                                                                                                                                           <  1:70251/141‑1 (MQ=255)     cGATTGCACTCGCTGAATTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCtt                                                                                                                                          <  1:1060430/141‑1 (MQ=255)      gATTGCACTCGCTGAATTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTa                                                                                                                                         >  2:778906/1‑141 (MQ=255)       aTTGCACTCGCTGAATTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTAt                                                                                                                                        >  1:793380/1‑141 (MQ=255)       aTTGCACTCGCTGAATTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTAt                                                                                                                                        >  2:1020265/1‑141 (MQ=255)         tGCACTCGCTGAATTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATgg                                                                                                                                      >  2:725714/1‑141 (MQ=255)           cACTCGCTGAATTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGtt                                                                                                                                    <  1:869229/141‑1 (MQ=255)            aCTCGCTGAATTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGttt                                                                                                                                   >  2:406709/1‑141 (MQ=255)                   gAATTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTAAAACCCCCCCAAAACTAGTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGt                                                                                                                            <  1:925002/141‑1 (MQ=255)                    aaTTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTa                                                                                                                           <  1:340845/141‑1 (MQ=255)                     aTTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAg                                                                                                                          >  2:710400/1‑141 (MQ=255)                       ttGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCactacataataaaccataagcg                                                                                                                        <  2:198376‑M1/141‑23 (MQ=255)                       ttGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCactacataataaaccataagcg                                                                                                                        <  1:1042393‑M1/141‑23 (MQ=255)                        tGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCACAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTgg                                                                                                                       >  1:733094‑M2/1‑139 (MQ=255)                        tGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTgg                                                                                                                       >  1:733110‑M2/1‑139 (MQ=255)                         gTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCactacataataaaccataagcggt                                                                                                                      <  2:464388‑M1/141‑25 (MQ=255)                         gTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTggt                                                                                                                      <  1:994716‑M2/141‑4 (MQ=255)                               aTTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGa                                                                                                                >  2:754259/1‑141 (MQ=255)                                 tCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCactacataataaaccataagcggttctttatc                                                                                                              <  2:200952‑M1/141‑33 (MQ=255)                                 tCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCactacataataaaccataagcggttctttatc                                                                                                              <  2:452908‑M1/141‑33 (MQ=255)                                  ccTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCactacataataaaccataagcggttctttatca                                                                                                             <  2:2584‑M1/141‑34 (MQ=255)                                    ttCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTa                                                                                                           <  1:661858/141‑1 (MQ=255)                                     tCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTAc                                                                                                          <  2:545182/141‑1 (MQ=255)                                     tCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTAc                                                                                                          <  2:631828/141‑1 (MQ=255)                                     tCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTAc                                                                                                          <  2:866374/141‑1 (MQ=255)                                       tAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACaa                                                                                                        <  2:25001/141‑1 (MQ=255)                                             taataTTAAAATAAATCCTGTTCAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGAGAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGa                                                                                                  <  2:376390/141‑1 (MQ=255)                                             taataTTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGa                                                                                                  >  2:95693/1‑141 (MQ=255)                                                   tAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGt                                                                                            <  2:737074/141‑1 (MQ=255)                                                     aaataaatCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTAt                                                                                          >  1:732069/1‑141 (MQ=255)                                                      aataaatCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATc                                                                                         >  1:999066/1‑141 (MQ=255)                                                       ataaatCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTAGAGCCTACAATTTTGATTATGTATCa                                                                                        >  1:1080956/1‑141 (MQ=255)                                                            tCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTc                                                                                   >  2:498862/1‑141 (MQ=255)                                                             ccTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCa                                                                                  <  2:464593/141‑1 (MQ=255)                                                              cTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCat                                                                                 <  1:16393/141‑1 (MQ=255)                                                              cTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCat                                                                                 >  1:319188/1‑141 (MQ=255)                                                                 ttAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCataat                                                                              >  1:867682/1‑141 (MQ=255)                                                                 ttAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCataat                                                                              <  2:191851/141‑1 (MQ=255)                                                                        tttAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATCCTTTTc                                                                       >  1:414072/1‑141 (MQ=255)                                                                        tttAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTc                                                                       <  2:452010/141‑1 (MQ=255)                                                                            aCTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCatct                                                                   >  2:39293/1‑138 (MQ=255)                                                                              ttCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTg                                                                 <  2:1027815/141‑1 (MQ=255)                                                                                  aaCTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAAt                                                             >  2:1033461/1‑141 (MQ=255)                                                                                    cTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATAc                                                           >  1:252105/1‑141 (MQ=255)                                                                                      cccccAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACACTCATAATACTTTTCAATTTGAAATActc                                                         >  2:55999/1‑141 (MQ=255)                                                                                          cAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGtt                                                     >  2:77299/1‑141 (MQ=255)                                                                                           aaaaCAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTc                                                    <  2:469303/141‑1 (MQ=255)                                                                                            aatcAATTATTAATTTACATTGCATAGCTAGACATAAATGATAAAGAGCCTCTTATTGTTTGTTATGTAGTTGTTCTTGAGCTTACAATTGTGATTATGTATCGCGCTCATAATACTTTTCAATTTGAAATACTGTGTTCg                                                   <  2:875076/138‑1 (MQ=255)                                                                                                aaTTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTa                                                                                                                                         <  1:788970/51‑1 (MQ=255)                                                                                                aaTTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTa                                                                                                                                         >  2:788970/1‑51 (MQ=255)                                                                                                 attattAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAatt                                              <  2:795806/141‑1 (MQ=255)                                                                                                  ttattaATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAatta                                             <  1:491853/141‑1 (MQ=255)                                                                                                  ttattaATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAatta                                             <  1:337487/141‑1 (MQ=255)                                                                                                  ttattaATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAatta                                             <  1:337357/141‑1 (MQ=255)                                                                                                       aaTTTACATTTGAGAGCGAGAGATGAATGATAAAGAACCGCTTATGGTTTATTATGTATTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAAGACTCTGTTCGCAATTATTAGt                                        <  2:1041619/141‑1 (MQ=255)                                                                                                        aTTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAATTATTAGtt                                       <  1:1080327/141‑1 (MQ=255)                                                                                                         tttACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAATTATTAGTTg                                      >  2:650635/1‑141 (MQ=255)                                                                                                                   agagCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAATTATTAGTTGAGTTATATCa                            >  2:714118/1‑141 (MQ=255)                                                                                                                    gagCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAATTATTAGTTGAGTTATATCaa                           <  2:1003788/141‑1 (MQ=255)                                                                                                                    gagCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAATCATTACTTGAGTTATATCaa                           >  2:373523/1‑141 (MQ=255)                                                                                                                     agCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCCACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAATTATTAGTTGAGTTATATCAAc                          <  1:924997/141‑1 (MQ=255)                                                                                                                       cGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAATTATTAGTTGAGTTATATCAACCa                        >  1:780514/1‑141 (MQ=255)                                                                                                                       cGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAATTATTAGTTGAGTTATATCAACCa                        >  2:936105/1‑141 (MQ=255)                                                                                                                        gagaCATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAATTATTGGTTGatataactcaactaa                       <  1:760151/141‑15 (MQ=255)                                                                                                                           aCATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAATTATTAGTTGAGTTATATCAACCAATAc                    >  2:861122/1‑141 (MQ=255)                                                                                                                             aTAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAATTATTAGTTGAGTTATATCAACCAATACAg                  >  2:734312/1‑141 (MQ=255)                                                                                                                                 aTGATAAAGAACCGCTTATGGTTTATTATGAAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAATTATTAGTTGAGTTATATCAACCAATACAGTGta              <  2:517149/141‑1 (MQ=255)                                                                                                                                  tGATAAAGAACCGCTTATGGTTTATTATGTAGTggttctttatcatttatgtctcgctctcaaatgtaaattaataattgttttgggggagtttgaagttaaatatttaacaggatttattttaatattattgttagaagg             <  2:2584‑M2/141‑109 (MQ=255)                                                                                                                                   gATAAAGAACCGCTTATGGTTTATTATGTAGTggttctttatcatttatgtctcgctctcaaatgtaaattaataattgttttgggggagtttgaagttaaatatttaacaggatttattttaatattattgttagaagga            <  2:452908‑M2/141‑110 (MQ=255)                                                                                                                                   gATAAAGAACCGCTTATGGTTTATTATGTAGTggttctttatcatttatgtctcgctctcaaatgtaaattaataattgttttgggggagtttgaagttaaatatttaacaggatttattttaatattattgttagaagga            <  2:200952‑M2/141‑110 (MQ=255)                                                                                                                                     tAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAATTATTAGTTGAGTTATATCAACCAATACAGTGTATAcc          <  2:782025/141‑1 (MQ=255)                                                                                                                                        aGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAATTATTAGTTGAGTTATATCAACCAATACAGTGTATACCTaa       >  2:741864/1‑141 (MQ=255)                                                                                                                                          aaCCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAATTATTAGTTGAGTTATATCAACCAATACAGTGTATACCTaaaa     >  1:829946/1‑141 (MQ=255)                                                                                                                                           aCCactacataataaaccataagcggttctttatcatttatgtctcgctctcaaatgtaaattaataattgttttgggggagtttgaagttaaatatttaacaggatttattttaatattattgttagaaggaatttttac    <  1:994716‑M1/141‑139 (MQ=255)                                                                                                                                           aCCGCTTATGGTTTATTATGTAGTggttctttatcatttatgtctcgctctcaaatgtaaattaataattgttttgggggagtttgaagttaaatatttaacaggatttattttaatattattgttagaaggaatttttac    <  2:464388‑M2/141‑118 (MQ=255)                                                                                                                                            ccactacataataaaccataagcggttctttatcatttatgtctcgctctcaaatgtaaattaataattgttttgggggagtttgaagttaaatatttaacaggatttattttaatattattgttagaaggaatttttaca   >  1:733110‑M1/1‑2 (MQ=255)                                                                                                                                            ccactacataataaaccataagcggttctttatcatttatgtctcgctctcaaatgtaaattaataattgttgtgggggagtttgaagttaaatatttaacaggatttattttaatattattgttagaaggaatttttaca   >  1:733094‑M1/1‑2 (MQ=255)                                                                                                                                            ccGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAATTATTAGTTGAGTTATATCAACCAATACAGTGTATACCTAAAAAt   <  2:303612/141‑1 (MQ=255)                                                                                                                                             cGCTTATGGTTTATTATGTAGTggttctttatcatttatgtctcgctctcaaatgtaaattaataattgttttgggggagtttgaagttaaatatttaacaggatttattttaatattattgttagaaggaatttttacaa  <  1:1042393‑M2/141‑120 (MQ=255)                                                                                                                                             cGCTTATGGTTTATTATGTAGTggttctttatcatttatgtctcgctctcaaatgtaaattaataattgttttgggggagtttgaagttaaatatttaacaggatttattttaatattattgttagaaggaatttttacaa  <  2:198376‑M2/141‑120 (MQ=255)                                                                                                                                             |                                                                                                                                             TATTCGATTGCACTCGCTGAATTTGTAAAAATTCCTTCTAACAATAATATTAAAATAAATCCTGTTAAATATTTAACTTCAAACTCCCCCAAAACAATTATTAATTTACATTTGAGAGCGAGACATAAATGATAAAGAACCGCTTATGGTTTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAATTATTAGTTGAGTTATATCAACCAATACAGTGTATACCTAAAAATT  >  CP000730/1709418‑1709698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.