New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2248208 =83 (0.940)6 (0.070) 6/248 NT 7.2% intergenic (+2/+128) coaA/USA300HOU_2120 possible pantothenate kinase/hypothetical protein
?CP000730 2248263 = 74 (0.870)intergenic (+57/+73) coaA/USA300HOU_2120 possible pantothenate kinase/hypothetical protein

ACTTACATTTTAATTGAATTGAGTTGTAAGTAATTAAGTGATAATAAATGGAACAATACGTATTCAAAACACTTAGACCATAAAATAAAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2248348‑2248208
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCACGCCAGTTTTTAAA  >  CP000730/2248263‑2248402
                                                                                                                                                                                                                                                                                         
ACTTACATTTTAATTGAATTGAGTTGTAAGTAATTAAGTGATAATAAATGGAACAATACGTATTCAAAACACTTAGACCATAAAATAAAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTT                                                                                                                                              <  1:366615/141‑1
ACTTACATTTTAATTGAATTGAGTTGTAAGTAATTAAGTGATAATAAATGGAACAATACGTATTCAAAACACTTAGACCATAAAATAAAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTT                                                                                                                                              <  2:367914/141‑1
ACTTACATTTTAATTGAATTGAGTTGTAAGTAATTAAGTGATAATAAATGGAACAATACGTATTCAAAACACTTAGACCATAAAATAAAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTT                                                                                                                                              <  1:663144/141‑1
      ATTTTAATTGAATTGAGTTGTAAGTAATTAAGTGATAATAAATGGAACAATACGTATTCAAAACACTTAGACCATAAAATAAAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTA                                                                                                                                        <  2:761794/141‑1
                                                                                       AAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTT                                                       >  1:678442/1‑141
                                                                                          GGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCAT                                                    >  2:821383/1‑141
                                                                                              ATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGA                                                >  1:458997/1‑141
                                                                                                 TATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAA                                             >  2:161032/1‑141
                                                                                                   TATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATT                                           >  2:567019/1‑141
                                                                                                                                   tttgctttgTATTTTATTGTTTAAGTGTTTTGAATGCGTTTTGTTCCATTTATTATCACTTAATTACTTACAACGCAATGCAATTAAAAGGTGAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCGCGCCA           <  2:22362/132‑1
                                                                                                                                        CTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCACGCCAGTTTT      <  2:632140/141‑1
                                                                                                                                         TTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCACGCCAGTTTTT     <  1:816422/141‑1
                                                                                                                                         TTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCACGCCAGTTTTT     <  2:927870/141‑1
                                                                                                                                            TATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCACGCCAGTTTTTAAA  >  1:732304/1‑141
                                                                                                                                                                                                                                                                                         
ACTTACATTTTAATTGAATTGAGTTGTAAGTAATTAAGTGATAATAAATGGAACAATACGTATTCAAAACACTTAGACCATAAAATAAAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2248348‑2248208
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCACGCCAGTTTTTAAA  >  CP000730/2248263‑2248402

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.