New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2661788 =88 (0.990)5 (0.060) 5/226 NT 6.8% intergenic (‑181/‑140) USA300HOU_2514/USA300HOU_2515 HAD superfamily hydrolase/ABC superfamily ATP binding cassette transporter, ABC protein
?CP000730 2661832 = 60 (0.770)intergenic (‑225/‑96) USA300HOU_2514/USA300HOU_2515 HAD superfamily hydrolase/ABC superfamily ATP binding cassette transporter, ABC protein

AGTTATTTAGTTTCATGTATACAACTCCTATGTATAAAGGGATTTATTACACCGATATTTAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2661943‑2661788
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatatagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGTTAAAAACAAAC  >  CP000730/2661832‑2661967
                                                                                                                                                                                                                                                                                                    
AGTTATTTAGTTTCATGTATACAACTCCTATGTATAAAGGGATTTATTACACCGATATTTAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATA                                                                                                                                                         <  1:849555/141‑1
 gttgtgTAGTTGCATGTATACAACTCCTATGTATAAAGGGATTTATTACACCGATATTTAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAA                                                                                                                                                        <  2:314209/135‑1
 GTTATTTAGTTTCATGTATACAACTCCTATGTATAAAGGGATTTATTACACCGATATTTAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAA                                                                                                                                                        >  1:727945/1‑141
   TATTTAGTTTCATTTATACAACTCCTATTTATAAAGTGATTTATTACACCGATATTTAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAAT                                                                                                                                                      <  2:807743/141‑1
   TATTTAGTTTCATGTATACAACTCCTATGTATAAAGGGATTTATTACACCGATATTTAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAAT                                                                                                                                                      >  1:1026522/1‑141
   TATTTAGTTTCATGTATACAACTCCTATGTATAAAGGGATTTATTACACCGATATTTAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAAT                                                                                                                                                      >  1:908243/1‑141
    ATTTAGTTTCATGTATACAACTCCTATGTATAAAGGGATTTATTACACCGATATTTAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATA                                                                                                                                                     >  2:117663/1‑141
    ATTTAGTTTCATGTATACAACTCCTATGTATAAAGGGATTTATTACACCGATATTTAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATA                                                                                                                                                     <  1:400948/141‑1
    ATTTAGTTTCATGTATACAACTCCTATGTATAAAGGGATTTATTACACCGATATTTAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATA                                                                                                                                                     <  1:588892/141‑1
     TTTAGTTTCATGTATACAACTCCTATGTATAAAGGGATTTATTACACCGATATTTAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATAT                                                                                                                                                    >  1:516993/1‑141
         GTTTCATGTCTACAACTCCTATGTATAAAGGGATTTATTACACCGATATTTAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTG                                                                                                                                                >  1:954661/1‑141
           TTCATGTATACAACTCCTATGTATAAAGGGATTTATTACACCGATATTTAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTGTG                                                                                                                                              <  1:881081/141‑1
                                  TAAAGGGATTTATTACACCGATATTTAATTGTATTTTTAAAGATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATAATAATTTATAACATCTAT                                                                                                                       >  1:14781/1‑141
                                  TAAAGGGATTTATTACACCGATATTTAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTAT                                                                                                                       >  2:14781/1‑141
                                                                                                            TAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTA                                             >  1:824359/1‑141
                                                                                                              GTATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATA                                           >  1:994147/1‑141
                                                                                                                       ACTATATTTTGTCTAAATGATAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACT                                  >  1:687767/1‑141
                                                                                                                                            AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGT             >  1:818161/1‑141
                                                                                                                                             AATATATTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCTGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGTT            <  2:902037/141‑1
                                                                                                                                             AATATAGTGTTATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGTT            <  2:293878/141‑1
                                                                                                                                             AATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGTT            <  2:478431/141‑1
                                                                                                                                                ATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGTTAAA         >  2:507739/1‑141
                                                                                                                                                ATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGTTAAA         <  1:653186/141‑1
                                                                                                                                                ATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACGAAATAACTATTCTTTAAAAGTTAAA         >  1:945347/1‑141
                                                                                                                                                ATAGTGTGATATACTAATTTATAACAGCTATACATAATGTGAAAGAATTTTTAAGAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATTAAACTAAATATCTATTCTTTAAAAGTTAAA         <  2:862150/141‑1
                                                                                                                                                    TGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGTTAAAAACA     >  2:402531/1‑141
                                                                                                                                                      TGATATAGTAATTTATAACATCGATTCATCATGTGAAAGAATTATTATAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTATATTACTATTCTTTAAAAGTTAAAAACAta   <  2:952977/141‑3
                                                                                                                                                      TGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGTTAAAAACAAA   <  2:588892/141‑1
                                                                                                                                                      TGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGTTAAAAACAAA   <  2:431410/141‑1
                                                                                                                                                      TGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGTTAAAAACAAA   <  2:504555/141‑1
                                                                                                                                                      TGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGTTAAAAACAAA   <  1:615036/141‑1
                                                                                                                                                       GATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGTTAAAAACAAAC  <  1:185842/141‑1
                                                                                                                                                                                                                                                                                                    
AGTTATTTAGTTTCATGTATACAACTCCTATGTATAAAGGGATTTATTACACCGATATTTAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2661943‑2661788
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatatagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGTTAAAAACAAAC  >  CP000730/2661832‑2661967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.