BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2543400	83 (0.940)	5 (0.060)	5/240	NT	5.8%	intergenic (+5/‑373)	USA300HOU_2403/hlgC	hypothetical protein/gamma hemolysin component C
*	?	CP000730	= 2543418	86 (1.040)	5 (0.060)	5/240	NT	5.8%	intergenic (+23/‑355)	USA300HOU_2403/hlgC	hypothetical protein/gamma hemolysin component C

Only 100 of 113 total aligned reads displayed.

TTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACATTAATTAAAAAAGAAAGCAAGACATTCGTGCAATCGGTTACCTTA  >  CP000730/2543260‑2543538

ttttAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA                                                                                                                                              <  2:562599‑M1/141‑1 (MQ=255)

ttttAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTCCTCAGACTAAAGTATCGCACCATAGTAGATACACAAATAATACAAAAGAAACAATTTAACTTGA                                                                                                                                              >  1:915485‑M1/1‑141 (MQ=255)

 tttAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAATAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGa‑a                                                                                                                                            >  2:470427/1‑141 (MQ=255)

 tttAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGa‑a                                                                                                                                            <  1:631201/141‑1 (MQ=255)

     aCAACTTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCt                                                                                                                                        >  1:304105/1‑141 (MQ=255)

     aCAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCt                                                                                                                                        >  1:1044967/1‑141 (MQ=255)

     aCAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATCAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCAAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCt                                                                                                                                        >  2:1075773/1‑141 (MQ=255)

         aTTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTtaaa                                                                                                                                    <  2:634702/141‑1 (MQ=255)

         aTTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTtaaa                                                                                                                                    <  1:908062/141‑1 (MQ=255)

            gAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAAAAACTGATTTTGATTAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTtaaataa                                                                                                                                 >  1:44846/1‑141 (MQ=255)

             aaTCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAACAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTtaaataaa                                                                                                                                <  1:616810/141‑1 (MQ=255)

              aTCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTaaataaat                                                                                                                               <  2:453878/141‑1 (MQ=255)

               tCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAaataaata                                                                                                                              >  2:705988/1‑141 (MQ=255)

                 aGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAAtatt                                                                                                                            >  1:1042103/1‑141 (MQ=255)

                 aGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAAtatt                                                                                                                            <  1:114876/141‑1 (MQ=255)

                   ccTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTAt                                                                                                                          <  1:558346‑M2/141‑2 (MQ=255)

                     ttATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTAtca                                                                                                                        <  2:749245‑M2/141‑4 (MQ=255)

                      tataACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTAtcaa                                                                                                                       <  1:916068‑M2/141‑5 (MQ=255)

                           cATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTAtcaagttaa                                                                                                                  <  1:489385‑M2/141‑10 (MQ=255)

                           cATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTAtcaagttaa                                                                                                                  <  1:489476‑M2/141‑10 (MQ=255)

                             ttAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTtaata                                                                                                                >  2:788182/1‑141 (MQ=255)

                             ttAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTtaata                                                                                                                <  1:198835/141‑1 (MQ=255)

                              tAAATTATTTTATCGTACATTAAATTTAATAATAACAACTTATTTTTATAAGAATAAAGTATTGAAACATAGTAGATACACAAATAATACAAATGAAACAATTTAACGTGAtaagatttatttatgccttcaagttaaatt                                                                                                                >  2:770688‑M1/1‑111 (MQ=255)

                              tAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGAtaatatttatttaagctttcaagttaaatt                                                                                                                <  1:773127‑M1/141‑31 (MQ=255)

                               aaaTTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATaaa                                                                                                              <  2:515417/141‑1 (MQ=255)

                                  ttattTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGAtaatatttatttaagctttcaagttaaattgttt                                                                                                            <  2:202186‑M1/141‑35 (MQ=255)

                                       ttATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACaattaat                                                                                                      >  2:1025451/1‑141 (MQ=255)

                                       ttATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACaattaat                                                                                                      <  1:38325/141‑1 (MQ=255)

                                         aTCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAAttt                                                                                                    <  2:398353/141‑1 (MQ=255)

                                         aTCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAAttt                                                                                                    <  2:153650/141‑1 (MQ=255)

                                          tCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAAtttt                                                                                                   >  1:734878/1‑141 (MQ=255)

                                            gTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTa                                                                                                 >  2:362553/1‑141 (MQ=255)

                                            gTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTa                                                                                                 <  2:180973/141‑1 (MQ=255)

                                              aCATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGa                                                                                               >  1:965585/1‑141 (MQ=255)

                                              aCATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGa                                                                                               >  1:193617/1‑141 (MQ=255)

                                               cATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGAt                                                                                              <  1:881139/141‑1 (MQ=255)

                                                aTTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATg                                                                                             >  1:22943/1‑141 (MQ=255)

                                                   aaaTTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGAt                                                                                          >  2:532718/1‑141 (MQ=255)

                                                        taataataaCAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATtcatc                                                                                     <  2:897168/141‑1 (MQ=255)

                                                        taataataaCAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATtcatc                                                                                     <  1:42656/141‑1 (MQ=255)

                                                        taataataaCAACTGATTCTTATAAAAATAAAGTATAGAACCATAGTAAATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTCAAATAAATATTTTCAAGTTAATAAACAATTAATTTTTAGATGGATtcatc                                                                                     <  2:1047716/141‑1 (MQ=255)

                                                         aataataaCAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGATAATATTTATTTAAGCTTcaagttaaattgtttcatttgtattatttgtgtatcta                                                                                      <  2:7630‑M2/141‑39 (MQ=255)

                                                         aataataaCAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTAtcaagttaaattgtttcatttgtattatttgtgtatcta                                                                                    <  1:7630‑M2/141‑40 (MQ=255)

                                                          ataataaCAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTACTAAACAATTAATTTTGAGATGGATTCATC‑aa                                                                                  <  2:1087439/141‑1 (MQ=255)

                                                          ataataaCAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑aa                                                                                  <  1:572283/141‑1 (MQ=255)

                                                          ataataaCAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑aa                                                                                  <  2:66433/141‑1 (MQ=255)

                                                          ataataaCAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAA‑TTTTAGATGTATTCATC‑aaa                                                                                 >  1:559245/1‑141 (MQ=255)

                                                             ataaCAACTTATTTTTATAAAAATAAAGTATCGAACCATAGTATATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑aaaaa                                                                               <  2:888609/141‑1 (MQ=255)

                                                             ataaCAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑aaaaa                                                                               <  2:656212/141‑1 (MQ=255)

                                                             ataaCAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑aaaaa                                                                               >  1:1034829/1‑141 (MQ=255)

                                                              taaCAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAAt                                                                              <  2:1044967/141‑1 (MQ=255)

                                                               aacaacTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATA‑AAAAATc                                                                             <  2:682379/141‑1 (MQ=255)

                                                                 caacTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTT‑GATGAATCCATCTAAAAAttaa                                                                           <  2:260961/141‑4 (MQ=255)

                                                                            tataAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACaa                                                                <  2:203882/141‑1 (MQ=255)

                                                                                aGAATAAAGGATAGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTg                                                            <  2:328640/141‑1 (MQ=255)

                                                                                  aaTAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTa                                                          <  1:846593/141‑1 (MQ=255)

                                                                                   aTAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTAt                                                         <  2:21515/141‑1 (MQ=255)

                                                                                     aaaGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTAttt                                                       <  2:831834/141‑1 (MQ=255)

                                                                                        gTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTAc                                                    <  1:470427/141‑1 (MQ=255)

                                                                                          aTCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACaa                                                  >  1:829641/1‑141 (MQ=255)

                                                                                           tCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACaaa                                                 >  2:830196/1‑141 (MQ=255)

                                                                                           tCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACaaa                                                 >  2:496328/1‑141 (MQ=255)

                                                                                             aaaCCATAGTAGATACACAAATAATACAAATGAAACACTTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACATTTTGTATTTTACAAACa                                               <  1:889845/140‑1 (MQ=255)

                                                                                             aaaCCATAGTAGATACACAAATAATACAAATGAAAAAAGATAACATGA‑AAGCGTAAATAAATATTATCAAGTTAATAAACAATTAAGCGTTAGATGGATTCATC‑AAAAAACGTAAAAAGCACAATTTGTATTTTACAAACa                                               <  2:795262/140‑1 (MQ=255)

                                                                                               aCCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACatt                                             >  2:700475/1‑141 (MQ=255)

                                                                                                    agtagATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACattaatta                                        <  1:625124/141‑1 (MQ=255)

                                                                                                      tagATACACAAATAATACAAATGAAACAATTTAACTTGAtaatatttatttaagctttcaagttaaattgtttcatttgtattatttgtgtatctactatggttcgatactttattcttataaaaatcagttgttattatt                                        <  1:7630‑M1/141‑103 (MQ=255)

                                                                                                      tagATACACAAATAATACAAATGAAACAATTTAACTTGAaagcttaaataaatattatcaagttaaattgtttcatttgtattatttgtgtatctactatggttcgatactttattcttataaaaatcagttgttattatt                                        <  2:7630‑M1/141‑103 (MQ=255)

                                                                                                       agATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACATTAATTaaaa                                     >  2:309251/1‑141 (MQ=255)

                                                                                                        gATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACATTAATTaaaaa                                    <  1:641690/141‑1 (MQ=255)

                                                                                                          tACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTAAAA‑AAAAAAAATAAAAAGCACAATTTGTATTTTACAAACATTAATTAAAaaag                                  <  2:333636/141‑1 (MQ=255)

                                                                                                              caAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACATTAATTAAAaaagaaag                              >  2:922007/1‑141 (MQ=255)

                                                                                                               aaaTAATACAAATGAAACCATTTACCATGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACATTAATTAAAAAAGAAAGc                             <  2:861021/141‑1 (MQ=255)

                                                                                                                 ataataCAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACATTAATTAAAAAAGAAAGCaa                           <  2:507412/141‑1 (MQ=255)

                                                                                                                 ataataCAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACATTAATTAAAAAAGAAAGCaa                           >  2:160921/1‑141 (MQ=255)

                                                                                                                 ataataCAAATGAAAAAATTTAACTTGA‑AAACTTAAATAAATATTATCAATTTAATAAACAATTAATTTTTAGAAAAAAAAAAA‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACATTAATTAAAAAAGAAAGCaa                           <  2:305481/141‑1 (MQ=255)

                                                                                                                      aCAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACATTAATTAAAAAAGAAAGCAAGatcc                      >  1:389977/1‑138 (MQ=255)

                                                                                                                        aaaTGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACATTAATTAAAAAAGAAAGCAAGACATTc                    >  2:958062/1‑141 (MQ=255)

                                                                                                                        aaaTGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACATTAATTAAAAAAGAAAGCAAGACATTc                    >  2:932573/1‑141 (MQ=255)

                                                                                                                             aaaCAATTTAACTTGA‑AAGCTTAAATAAATATTAtcaagttaaattgtttcatttgtattatttgtgtatctactatggttcgatactttattcttataaaaatcagttgttattattaaatttaatgtacgataaaataa                <  2:202186‑M2/141‑108 (MQ=255)

                                                                                                                               aCAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACATTAATTAAAAAAGAAAGCAAGACATTCGTGCAAt             <  1:1046585/141‑1 (MQ=255)

                                                                                                                                 aaTTTAACTTGA‑AGGCATAAATAAATCTTAtcacgttaaattgtttcatttgtattatttgtgtatctactatgtttcaatactttattcttataaaaataagttgttattattaaatttaatgtacgataaaataattta            >  2:770688‑M2/1‑30 (MQ=255)

                                                                                                                                 aaTTTAACTTGA‑AAGCTTAAATAAATATTAtcaagttaaattgtttcatttgtattatttgtgtatctactatggttcgatactttattcttataaaaatcagttgttattattaaatttaatgtacgataaaataattta            <  1:773127‑M2/141‑112 (MQ=255)

                                                                                                                                 aaTTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTTTTTTTTTTTATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACATTAATTAAAAAAGAAAGCAAGACATTCGTGCAATCg           >  2:755819/1‑141 (MQ=255)

                                                                                                                                 aaTTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACATTAATTAAAAAAGAAAGCAAGACATTCGTGCAATCg           >  1:42916/1‑141 (MQ=255)

                                                                                                                                 aaTTTAACTTGA‑AAGATTAAATAAATATTAACAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACATTAATTAAAAAAGAAAGCAAGACATTCGTGCAATCg           <  2:1028832/141‑1 (MQ=255)

                                                                                                                                   tttAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACATTAATTAAAAAAGAAAGCAAGACATTCGTGCAATCGGt         <  2:508277/141‑1 (MQ=255)

                                                                                                                                   tttAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACATTAATTAAAAAAGAAAGCAAGACATTCGTGCAATCGGt         >  1:394659/1‑141 (MQ=255)

                                                                                                                                    ttAACTTGAtaatatttatttaagctttcaagttaaattgtttcatttgtattatttgtgtatctactatggttcgatactttattcttataaaaatcagttgttattattaaatttaatgtacgataaaataatttaatg          <  1:489385‑M1/141‑133 (MQ=255)

                                                                                                                                    ttAACTTGAtaatatttatttaagctttcaagttaaattgtttcatttgtattatttgtgtatctactatggttcgatactttattcttataaaaatcagttgttattattaaatttaatgtacgataaaataatttaatg          <  1:489476‑M1/141‑133 (MQ=255)

                                                                                                                                     tAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCGCAATTTGTATTTTACAAACATTAATTAAAAAAGAAAGCAAGACATTCGTGCAATCGGTTa       <  1:949748/141‑1 (MQ=255)

                                                                                                                                     tAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACATTAATTAAAAAAGAAAGCAAGACATTCGTGCAATCGGTTa       >  1:503709/1‑141 (MQ=255)

                                                                                                                                      aagttGA‑AAGCTTAAATAAATATTCTCAAGTTAATAAATAATTAACTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGAACAATTTGTATTTTACAAACATTAATTAAAAATAAAAGCAAGACATTCGTGCAATCGGTTAc      <  2:970031/138‑1 (MQ=255)

                                                                                                                                       aCTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACATTAATTAAAAAAGAAAGCAAGACATTCGTGCAATCGGTTAcc     >  1:295920/1‑141 (MQ=255)

                                                                                                                                       aCTTAA‑AAGAATAAATAAATATAATCAAGTTAATAAACAATTAATTTTTAGATGGATTAAAC‑AAAAAACATAAAAAGCAAAATTTGTATTTTACAAAAAAAAAAAAAAAAAGAAAGCAAGACATTCGTGCAATCGGTTAcc     <  2:1037912/141‑1 (MQ=255)

                                                                                                                                        cTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACATTAATTAAAAAAGAAAGCAAGACATTCGTGCAATCGGTTACCt    <  1:501356/141‑1 (MQ=255)

                                                                                                                                        cTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACATTAATTAAAAAAGAAAGCAAGACATTCGTGCAATCGGTTACCt    <  1:346704/141‑1 (MQ=255)

                                                                                                                                         ttGAtaatatttatttaagctttcaagttaaattgtttcatttgtattatttgtgtatctactatggttcgatactttattcttataaaaatcagttgttattattaaatttaatgtacgataaaataatttaatgttata     <  1:916068‑M1/141‑138 (MQ=255)

                                                                                                                                          tGAtaatatttatttaagctttcaagttaaattgtttcatttgtattatttgtgtatctactatggttcgatactttattcttataaaaatcagttgttattattaaatttaatgtacgataaaataatttaatgttataa    <  2:749245‑M1/141‑139 (MQ=255)

                                                                                                                                            ataatatttatttaagctttcaagttaaattgtttcatttgtattatttgtgtatctactatggttcgatactttattcttataaaaatcagttgttattattaaatttaatgtacgataaaataatttaatgttataagg  <  1:558346‑M1/141‑141 (MQ=255)

TTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACACAAATAATACAAATGAAACAATTTAACTTGA‑AAGCTTAAATAAATATTATCAAGTTAATAAACAATTAATTTTTAGATGGATTCATC‑AAAAATCGTAAAAAGCACAATTTGTATTTTACAAACATTAATTAAAAAAGAAAGCAAGACATTCGTGCAATCGGTTACCTTA  >  CP000730/2543260‑2543538

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.