New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1277483 =	37 (1.000)	4 (0.120)	3/238	NT	11.7%	intergenic (+81/‑865)	pyrH/uppS	UMP kinase/di‑trans, poly‑cis‑decaprenylcistransferase
	?	CP000730	1277520 =	26 (0.760)					intergenic (+118/‑828)	pyrH/uppS	UMP kinase/di‑trans, poly‑cis‑decaprenylcistransferase

GTCGTATGGAGAAATAACAAGTAAACGTGCTTCTGGAACATTGATGCTTGCTAATTGTTGTACAGGTGTTGGTGCACCATAGTAATCAACTGTTACGCCGTTTAATAAATTTGAATTAGCTCTTCCTGCACTGATGTTAGCTAATTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1277630‑1277483 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctaattcaAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTGTTATTTCTCCATACGACAAAACTTCTGTAGCTGACATC  >  CP000730/1277520‑1277651                                                                                                                                                                                                                                                                                          GTCGTATGGAGAAATAACAAGTAAACGTGCTTCTGGAACATTGATGCTTGCTAATTGTTGTACAGGTGTTGGTGCACCATAGTAATCAACTGTTACGCCGTTTAATAAATTTGAATTAGCTCTTCCTGCACTGATGTTAGC                                                                                                                                             <  2:388253/141‑1  TCGTATGGAGAAATAACAAGTAAACGTGCTTCTGGAACATTGATGCTTGCTAATTGTTGTACAGGTGTTGGTGCACCATAGTAATCAACTGTTACGCCGTTTAATAAATTTGAATTAGCTCTTCCTGCACTGATGTTAGCT                                                                                                                                            <  2:302063/141‑1  TCGTATGGAGAAATAACAAGTAAACGTGCTTCTGGAACATTGATGCTTGCTAATTGTTGTACAGGTGTTGGTGCACCATAGTAATCAACTGTTACGCCGTTTAATAAATTTGAATTAGCTCTCCCTGCACTGATGTTAGCT                                                                                                                                            <  1:197123/141‑1   CGTATGGAGAAATAACAAGTAAACGTGCTTCTGGAACATTGATGCTTGCTAATTGTTGTACAGGTGTTGGTGCACCATAGTAATCAACTGTTACGCCGTTTAATAAATTTGAATTAGCTCTTCCTGCACTGATGTTAGCTA                                                                                                                                           >  2:161971/1‑141       TGGAGAAATAACAAGTAAACGTGCTTCTGGAACATTGATGCTTGCTAATTGTTGTACAGGTGTTGGTGCACCATAGTAATCAACTGTTACGCCGTTTAATAAATTTGAATTAGCTCTTCCTGCACTGATGTTAGCTAATTC                                                                                                                                       <  1:174052/141‑1                                                                                                                  AATTAGCTCTTCCTGCACTGATGTTAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTGTTATTTCTCCAT                            >  1:139359/1‑141                                                                                                                  AATTAGCTCTTCCTGCACTGATGTTAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTGTTATTTCTCCAT                            >  1:139360/1‑141                                                                                                                       GCTCTTCCTGCACTGATGTTAGCTAATTCAAATTTATTAAACGGC                                                                                                                       >  1:67328/1‑45                                                                                                                       GCTCTTCCTGCACTGATGTTAGCTAATTCAAATTTATTAAACGGC                                                                                                                       <  2:67328/45‑1                                                                                                                                            GCTAATTGAAATTTATTAAACGGCGTAACAGTTGATTACTATGGGGCACCAACCCCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTGTTATTTCTCCATACGACAAAACTTCTGTAGCTGACATC  >  2:409953/1‑141                                                                                                                                                                                                                                                                                          GTCGTATGGAGAAATAACAAGTAAACGTGCTTCTGGAACATTGATGCTTGCTAATTGTTGTACAGGTGTTGGTGCACCATAGTAATCAACTGTTACGCCGTTTAATAAATTTGAATTAGCTCTTCCTGCACTGATGTTAGCTAATTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1277630‑1277483 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctaattcaAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTGTTATTTCTCCATACGACAAAACTTCTGTAGCTGACATC  >  CP000730/1277520‑1277651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.