New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1277483 =	37 (1.000)	4 (0.120)	3/238	NT	11.7%	intergenic (+81/‑865)	pyrH/uppS	UMP kinase/di‑trans, poly‑cis‑decaprenylcistransferase
	?	CP000730	1277520 =	26 (0.760)					intergenic (+118/‑828)	pyrH/uppS	UMP kinase/di‑trans, poly‑cis‑decaprenylcistransferase

GGAAATATTAAACGTGCTGTTATGGGTGAAAAGATAGGTACGTTAATTACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTG  >  CP000730/1277346‑1277613                                                                                                                                          |                                                                                                                                   gggaaTATTAAACGTGCTGTTATGGGTGAAAAGATAGGTACGTTAATTACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGaa                                                                                                                                 <  2:277287/138‑1 (MQ=255)     atatTAAACGTGCTGTTATGGGTGAAAAGATAGGTACGTTAATTACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAg                                                                                                                             <  1:85930/141‑1 (MQ=255)      gatgtcagctacagaagttttgtcgtatggagaaataacaagtaaacgtgcttctggaacattgatgcttgctaattgttgtacaggggttggtgccccatagtaatcaactgttacgccgtttaataaattTCAATTAGc                                                                                                                            >  2:409953‑M1/133‑141 (MQ=255)       atTAAACGTGCTGTTATGGGTGAAAAGATAGGTACGTTAATTACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCt                                                                                                                           <  1:268866/141‑1 (MQ=255)          aaaCGTGCTGTTATGGGTGAAAAGATAGGTACGTTAATTACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAAc                                                                                                                        >  1:46181/1‑141 (MQ=255)          aaaCGTGCTGTTATGGGTGAAAAGATAGGTACGTTAATTACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAAc                                                                                                                        <  1:396466/141‑1 (MQ=255)                gCTGTTATGGGTGAAAAGATAGGTACGTTAATTACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGt                                                                                                                  >  1:161971/1‑141 (MQ=255)                 cTGTTATGGGTGAAAAGATAGGTACGTTAATTACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTg                                                                                                                 >  2:58194/1‑141 (MQ=255)                   gTTATGGGTGAAAAGATAGGTACGTTAATTACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCa                                                                                                               >  2:236361/1‑141 (MQ=255)                    ttATGGGTGAAAAGATAGGTACGTTAATTACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAg                                                                                                              >  2:257800/1‑141 (MQ=255)                     tATGGGTGAAAAGATAGGTACGTTAATTACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAgg                                                                                                             <  2:103772/141‑1 (MQ=255)                           tGAAAAGATAGGTACGTTAATTACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGc                                                                                                       >  2:349535/1‑141 (MQ=255)                               aaGATAGGTACGTTAATTACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAAACAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAAt                                                                                                   <  1:224674/141‑1 (MQ=255)                                atggagaaataacaagtaaacgtgcttctggaacattgatgcttgctaattgttgtacaggtgttggtgcaccatagtaatcaactgttacgccgtttaataaattTGAATTAGCTAACATCAGTGCAGGAAGAGCTAAtt                                                                                                  >  1:139360‑M1/107‑141 (MQ=255)                                atggagaaataacaagtaaacgtgcttctggaacattgatgcttgctaattgttgtacaggtgttggtgcaccatagtaatcaactgttacgccgtttaataaattTGAATTAGCTAACATCAGTGCAGGAAGAGCTAAtt                                                                                                  >  1:139359‑M1/107‑141 (MQ=255)                                   tAGGTACGTTAATTACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCaa                                                                                               >  2:66665/1‑141 (MQ=255)                                      gTACGTTAATTACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGATAACATCAGTGCAGGAAGAGCTAATTCAAAtt                                                                                            <  2:312608/141‑1 (MQ=255)                                       tACGTTAATTACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAAttt                                                                                           >  1:408988/1‑141 (MQ=255)                                                tACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACgg                                                                                  >  2:84324/1‑141 (MQ=255)                                                     aataaatTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTaa                                                                             <  2:175126/141‑1 (MQ=255)                                                           tttAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTg                                                                       >  1:88281/1‑141 (MQ=255)                                                            ttAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGa                                                                      >  1:313032/1‑141 (MQ=255)                                                            taagagGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGa                                                                      >  2:48429/3‑141 (MQ=255)                                                                agGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTAc                                                                  >  2:324212/1‑141 (MQ=255)                                                                           aatGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCAcc                                                       >  2:275090/1‑141 (MQ=255)                                                                            atGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCa                                                      <  2:407123/141‑1 (MQ=255)                                                                            atGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCa                                                      <  1:54179/141‑1 (MQ=255)                                                                            atGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCa                                                      <  1:341894/141‑1 (MQ=255)                                                                                    cATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGt                                              <  1:177118/141‑1 (MQ=255)                                                                                      ttattaATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTac                                            <  2:325818/141‑1 (MQ=255)                                                                                                  cTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTagcaa                                >  2:116182/1‑141 (MQ=255)                                                                                                        cAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATTAAAGCAGGAAGAGCTAATTCAAATTTATTAAACGGAGTAACAGTTGATTACTATGGTGCAACAACACCTGTACAACAATTAGCAAGCATCa                          >  1:214888/1‑141 (MQ=255)                                                                                                               gCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTcc                   <  1:149299/141‑1 (MQ=255)                                                                                                                    aatcaatcGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAg              <  1:72827/141‑1 (MQ=255)                                                                                                                      tcaatcGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCa            <  1:349535/141‑1 (MQ=255)                                                                                                                           gccgtttaataaattTGAATTAGCTAACATCAGTGCAGGAAGAGc                                                                                                       <  2:67328‑M1/30‑1 (MQ=255)                                                                                                                           gccgtttaataaattTGAATTAGCTAACATCAGTGCAGGAAGAGc                                                                                                       >  1:67328‑M1/16‑45 (MQ=255)                                                                                                                               aGCGTATCACGGGAATTAGCTAACATCAGTGCAGGGAGAGCTAATGCAAGTTTATCAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCACTGTTCCAGAAGCACGTTTACtt   <  2:123751/141‑1 (MQ=255)                                                                                                                                gCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTg  <  2:219743/141‑1 (MQ=255)                                                                                                                                gCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTg  <  1:393426/141‑1 (MQ=255)                                                                                                                                gCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTg  <  2:236380/141‑1 (MQ=255)                                                                                                                                gCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTg  <  1:30253/141‑1 (MQ=255)                                                                                                                                gCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTg  >  1:129587/1‑141 (MQ=255)                                                                                                                                          |                                                                                                                                   GGAAATATTAAACGTGCTGTTATGGGTGAAAAGATAGGTACGTTAATTACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTG  >  CP000730/1277346‑1277613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.