| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2847743 | 34 (0.920) | 7 (0.210) | 4/230 | NT | 18.6% | intergenic (+52/+97) | USA300HOU_2689/cbiQ | hypothetical protein/possible gluconolactonase |
| ? | CP000730 | = 2847754 | 31 (0.940) | intergenic (+63/+86) | USA300HOU_2689/cbiQ | hypothetical protein/possible gluconolactonase | |||||
GCACTTGAAACTGGTGGCGTAATGCTAGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2847614‑2847743‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatgccaactata‑CCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAATTCAGCTGATGCTTCGAATTTAACATCTTTGCCTAGCATTACGCCACCAGTTTCAAGTG < CP000730/2847754‑2847615 GCACTTGAAACTGGTGGCGTAATGCTAGGCAAAGATGTTAAATTCGAAGCATCAGCTGCATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATA‑CCTAGGGATGA < 2:342907/141‑1 AGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATA‑CCTAGGGATGA > 2:455213/1‑109 AGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATA‑CCTAGGGATGA < 1:375635/109‑1 AGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATA‑CCTAGGGATGA > 2:375635/1‑109 AGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATA‑CCTAGGGATGA < 1:455213/109‑1 CTCAATCTCAGAATAATCTCATTCCACAATCCTCATTGTTTTAATATATATACGAAATGCTAACTATA‑TCATCCCTAGGTATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAG > 1:287241/1‑141 AATATATATACGAAATGCCAACTATATCATCCCTA‑GGTATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGCTTATTCTGAGATTGAGAATTCAGCTGATGCTTCGAATTTAACATCTTTGCCT > 2:184471/1‑141 CCAACTATA‑CCTATGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAATTCAGCTGATGCTTCGAATTTAACATCTTTGCCTAGCATTACGCCACCAGT < 2:220673/141‑1 AACTATA‑CCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAATTCAGCTGATGCTTCGAATTTAACATCTTTGCCTAGCATTACGCCACCAGTTT < 1:421480/141‑1 ACTATA‑CCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAATTCAGCTGATGCTTCGAATTTAACATCTTTGCCTAGCATTACGCCACCAGTTTC < 2:93129/141‑1 ACTATA‑CCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAATGCAGCTGATGCTTCGAATTTAACATCTTTGCCTAGCATTACGCCACCAGTTTC < 2:434760/141‑1 A‑CCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAATTCAGCTGATGCTTCGAATTTAACATCTTTGCCTAGCATTACGCCACCAGTTTCAAGTG > 1:354571/1‑141 A‑CCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAATTCAGCTGATGCTTCGAATTTAACATCTTTGCCTAGCATTACGCCACCAGTTTCAAGTG > 1:170773/1‑141 GCACTTGAAACTGGTGGCGTAATGCTAGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2847614‑2847743‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatgccaactata‑CCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAATTCAGCTGATGCTTCGAATTTAACATCTTTGCCTAGCATTACGCCACCAGTTTCAAGTG < CP000730/2847754‑2847615 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |