| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2847743 | 34 (0.920) | 7 (0.210) | 4/230 | NT | 18.6% | intergenic (+52/+97) | USA300HOU_2689/cbiQ | hypothetical protein/possible gluconolactonase |
| ? | CP000730 | = 2847754 | 31 (0.940) | intergenic (+63/+86) | USA300HOU_2689/cbiQ | hypothetical protein/possible gluconolactonase | |||||
GCACTTGAAACTGGTGGCGTAATGCTAGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACTTTGATGACCTTTTGCAAAGCCATTAAC > CP000730/2847614‑2847884 | gCACTTGAAACTGGTGGCGTAATGCTAGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAgg > 1:2800/1‑141 (MQ=255)gCACTTGAAACTGGTGGCGTAATGCTAGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAgg > 1:393797/1‑141 (MQ=255) cACTTGAAACTGGTGGCGTAATGCTAGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGt > 1:354571‑M2/1‑140 (MQ=255) cACTTGAAACTGGTGGCGTAATGCTAGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGt > 1:170773‑M2/1‑140 (MQ=255) gAAACTGGTGGCGTAATGCTAGGCAAAGATGTTAAATTCGAAGCATCAGCTGCATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGtatagt < 2:434760‑M2/141‑7 (MQ=255) gAAACTGGTGGCGTAATGCTAGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGtatagt < 2:93129‑M2/141‑7 (MQ=255) aaaCTGGTGGCGTAATGCTAGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGtatagtt < 1:421480‑M2/141‑8 (MQ=255) aCTGGTGGCGTAATGCTAGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCATAGGtatagttgg < 2:220673‑M2/141‑10 (MQ=255) aCTGGTCGCGTAGTGCTAGGCAAAGATGTTATATTCGAAGCATCAGCTGAATACGCAATCTCAGAATAATCTCATCTCACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTAGATCCCCGCGAGATGTAGTTgg < 2:337685/141‑1 (MQ=255) aTGCTAGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCGCGAGCTCAGAATAATCTCATTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGttt < 1:230274/141‑1 (MQ=255) aGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAAGCTCATTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATACC‑TAGGGATGatatagttggcatttcgtatatatatt > 2:184471‑M2/1‑114 (MQ=255) tGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAAc < 2:445887/141‑1 (MQ=255) ttAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCAGTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACaa > 1:374227/1‑141 (MQ=255) aaaTTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGc > 2:90905/1‑141 (MQ=255) aaGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACt > 1:266673/1‑141 (MQ=255) gCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATGTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑ccc < 1:443359/141‑1 (MQ=255) ctcAGAATAATCTCATTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGcc < 1:294175/141‑1 (MQ=255) ctcAGAATAATCTCATTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATACCTAGGGATGAtatagttagcatttcgtatatatattaaaacaatgaggattgtggaatgagattattctgagattgag > 1:287241‑M2/1‑73 (MQ=255) ataatCTCATTACACAATCCTCATTGTTTTAATATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTAAGACGCCTttc > 2:429309/1‑141 (MQ=255) aatCTCATTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTttcattc < 1:378935/141‑1 (MQ=255) tcATTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTTTCATTCaggt < 1:145213/141‑1 (MQ=255) cATTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTTTCATTCaggta < 1:315165/141‑1 (MQ=255) aTTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTTTCATTCaggtag > 2:188192/1‑141 (MQ=255) tACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTTTCATTCaggtaggt > 2:31292/1‑141 (MQ=255) acacAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATCTCCACCCTAGCTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTTTCATTCAGGTAGGTc < 1:87461/141‑1 (MQ=255) ttGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTg < 1:60168/141‑1 (MQ=255) gTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGaa < 1:249180/141‑1 (MQ=255) ttA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAAc < 1:107294/141‑1 (MQ=255) tA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACt > 1:243399/1‑141 (MQ=255) tatataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACTTtgat < 2:100146/141‑1 (MQ=255) atataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAACCTGAAAACtttatt > 2:227475/1‑138 (MQ=255) atataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACTTtgatg > 2:227483/1‑141 (MQ=255) aCGACATGCCAACTATATCATCCCTAGGTATAGTTGGCATCTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACTTTGATGACCt < 2:402023/141‑1 (MQ=255) cGAAATGCCAACTATATAATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACTTTGATGACCtt < 1:121534/141‑1 (MQ=255) cGAAATGCCAACTATAACATCCCTAGGTATAGTTGGCATTTTTTGTTTAACTCATATGTAAAAAGCACTAACATTTCA‑CCCTAATTTTAGACGCCTTTCATTCAGGTATGTCTTATTAAAACTGAAAACTTTGATGACCtt > 2:88033/1‑141 (MQ=255) ccAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACTTTGATGACCTTTTGCaaa > 1:125947/1‑141 (MQ=255) ccAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACTTTGATGACCTTTTGCaaa > 1:173072/1‑141 (MQ=255) ccaCTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACTTTGATGACCTTTTGCAAAg < 1:93129/139‑1 (MQ=255) cAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACTTTGATGACCTTTTGCAAAg < 2:423296/141‑1 (MQ=255) aCTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACTTTGATGACCTTTTGCAAAGcc > 2:412522/1‑141 (MQ=255) tataTCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACTTTGATGACCTTTTGCAAAGCCAt > 1:362883/1‑141 (MQ=255) tcatcCCTAGGtatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattctgagattgagaattcagctgatgcttcgaatttaacatct > 2:375635‑M2/1‑11 (MQ=255) tcatcCCTAGGtatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattctgagattgagaattcagctgatgcttcgaatttaacatct > 2:455213‑M2/1‑11 (MQ=255) tcatcCCTAGGtatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattctgagattgagaattcagctgatgcttcgaatttaacatct < 1:375635‑M2/109‑99 (MQ=255) tcatcCCTAGGtatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattctgagattgagaattcagctgatgcttcgaatttaacatct < 1:455213‑M2/109‑99 (MQ=255) tcatcCCTAGGtatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattctgagattgagaatgcagctgatgcttcgaatttaacatctttgcctagcattacgccaccagtttcaagtgc < 2:342907‑M2/141‑131 (MQ=255) tcatcCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTCTTGAAACTGAAAACTTTTATGACCTTGTGCAAAGCCAGTAAc > 1:40698/1‑141 (MQ=255) | GCACTTGAAACTGGTGGCGTAATGCTAGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTA‑‑ATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA‑CCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACTTTGATGACCTTTTGCAAAGCCATTAAC > CP000730/2847614‑2847884 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |