New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	551684 =	38 (1.030)	4 (0.110)	3/244	NT	11.1%	intergenic (+13/‑203)	cysK/sul	cysteine synthase/dihydropteroate synthase, subunit A
	?	CP000730	551723 =	28 (0.800)					intergenic (+52/‑164)	cysK/sul	cysteine synthase/dihydropteroate synthase, subunit A

CAGGTGCTGCGATTTATGCTGCCATTCAAAAAGCAAAAGAATTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACATACTAATAA  >  CP000730/551544‑551823                                                                                                                                             |                                                                                                                                            tgtttaactctaataaaatttactcctgctatttactagttattagtatgtacgtttattatcttatcattcactggatatttttatcagaaaaatgtttaatttaacgctcatatttttaaaaatatacatggtagaaaa                                                                                                                                             >  1:117067‑M1/141‑141 (MQ=255)   ggTGCTGCGATTTATGCTGCCATTCAAAAAGCAAAAGAATTAAGAAAAGGTAAAACAGTAGTAACAGTATTGACGAGTAATGGTGAACGCTACTTATCAACACCTATATATTCATTCGATGACTAATTAATGTCATTTaaa                                                                                                                                           <  2:366255/141‑1 (MQ=255)      gctgcGATTTATGCTGCCATTCAAAAAGCAAAAGAATTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAaga                                                                                                                                        >  2:223065/1‑141 (MQ=255)             tttATGCCGCCATTCAAAAAGCAAAAGGATTAGGCAAAGGTCACACAGTAGTAACAGTATTGCCGAGGAACTGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAgagtgaggt                                                                                                                                 >  2:411915/1‑139 (MQ=255)                   ctgcCATTCAAAAAGCAAAAGAATTAGGAAAAGNTAANACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCAGTCGATGACTAATTAATGTTATTTAAAAGAGTGAGTTGGCttt                                                                                                                           >  1:383441/1‑141 (MQ=255)                     gcCATTCAAAAAGCAAAAGAATTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCttttt                                                                                                                         <  1:83103/141‑1 (MQ=255)                     gcCATTCAAAAAGCAAAAGAATTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCttttt                                                                                                                         >  1:153716/1‑141 (MQ=255)                     gcCATTCAAAAAGCAAAAGAATTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCttttt                                                                                                                         >  1:370176/1‑141 (MQ=255)                           cAAAAAGCAAAAGAATTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATa                                                                                                                   >  1:56717/1‑141 (MQ=255)                             aaaaGCAAAAGAATTAGGAAAAGGTAAGACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATATTTTTGAGATAAc                                                                                                                 >  2:359769/1‑141 (MQ=255)                             aaaaGCAAAAGAATTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAAc                                                                                                                 >  2:230854/1‑141 (MQ=255)                                     aaGAATTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCtt                                                                                                         >  1:372900/1‑141 (MQ=255)                                      agttattagtatgtacgtttattatcttatcattcactggatatttttatcagaaaaatgtttaatttaacgctcatatttttaaaaatatacatggtagaaaAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCttt                                                                                                        >  1:198349‑M1/104‑141 (MQ=255)                                       gAATTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCtttt                                                                                                       >  2:164718/1‑141 (MQ=255)                                        aaTTAGGAAAAGTTAAAACACTAGTAACAGTATTGCCGAGAAATGGTGAACGCTACTTATCAACACCTTTATATTTATTCGATGACTCTTTAATCTCTTTTAAAAGAGTGAGTTATCTTTTTGAGTTAACTTGCTCttttt                                                                                                      <  2:84346/141‑1 (MQ=255)                                        aaTTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATATAATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCttttt                                                                                                      <  2:29447/141‑1 (MQ=255)                                         aTTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCtttttt                                                                                                     <  2:76373/141‑1 (MQ=255)                                              gAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTAc                                                                                                >  2:71330/1‑141 (MQ=255)                                                  aGGTAAAACAGTGGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATg                                                                                            <  2:366805/141‑1 (MQ=255)                                                  aGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATg                                                                                            <  1:85053/141‑1 (MQ=255)                                                   ggTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGt                                                                                           >  1:226789/1‑141 (MQ=255)                                                   ggTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGt                                                                                           >  1:360302/1‑141 (MQ=255)                                                     tAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGtat                                                                                         >  2:191459/1‑141 (MQ=255)                                                              agtaACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGCTAACTTGCTCTTTTTTTCTACCATGTATATTTTTaaa                                                                                >  1:17368/1‑141 (MQ=255)                                                                    aGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTACATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATg                                                                          <  2:424152/141‑1 (MQ=255)                                                                         tGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGt                                                                     <  1:145054/141‑1 (MQ=255)                                                                         tGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTATTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGt                                                                     <  2:98928/141‑1 (MQ=255)                                                                          gCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTTAGATAACTTGCTCTTTTTTTTTTTCATGTATATTTTTAATAATATGAGCGtt                                                                    >  2:125716/1‑141 (MQ=255)                                                                             gcgTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTTATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGttaaa                                                                 >  2:326794/3‑141 (MQ=255)                                                                                   tGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAAc                                                           >  2:452390/1‑141 (MQ=255)                                                                                    ggTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACa                                                          >  1:229253/1‑141 (MQ=255)                                                                                             tACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGa                                                 <  2:56717/141‑1 (MQ=255)                                                                                                  aTCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATaaaa                                            <  1:110545/141‑1 (MQ=255)                                                                                                     aaCACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTCACTGCAACATGTTTCTGATAAAAata                                         <  2:457747/141‑1 (MQ=255)                                                                                                         ccTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCa                                     >  1:381618/1‑141 (MQ=255)                                                                                                               tatTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGCAt                               >  2:334355/1‑141 (MQ=255)                                                                                                                     ttcGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTTATAAAAATATCCAGTGAATgataag                         <  2:196859/141‑1 (MQ=255)                                                                                                                               aattaatGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAAcc               >  2:239843/1‑140 (MQ=255)                                                                                                                                   atggtagaaaAAAAGAGCAAGTTATCTCAAAAAGATAACTCACTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTTATAAAAATATCTAGTGAATGATAAGATAATAAACGTACa           <  2:240964‑M1/131‑1 (MQ=255)                                                                                                                                    tggtagaaaAAAAGAGCAAGTTATCTCAAAAAGATAACTCACTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACAt          <  2:328785‑M1/132‑1 (MQ=255)                                                                                                                                    tggtagaaaAAAAGAGCAAGTTATCTCAAAAAGATAACTCACTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACAt          <  2:21326‑M1/132‑1 (MQ=255)                                                                                                                                    atGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTTTAATTATGTGCGTTAAATTAAACATTTTTCTGATAAAAATATACAGTGAATGATAAGATAATAAACGTACAt          >  2:177073/1‑141 (MQ=255)                                                                                                                                    atGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTACTACCTTGTATATTTGTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACAt          <  1:316792/141‑1 (MQ=255)                                                                                                                                     tGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACATa         <  1:30357/141‑1 (MQ=255)                                                                                                                                            tAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTTTACCTTGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTGTGATTAAAATATCCAGTGAATTATAAGATAAGTAACGTACAtactaagaa  <  2:83680‑M1/140‑4 (MQ=255)                                                                                                                                             |                                                                                                                                            CAGGTGCTGCGATTTATGCTGCCATTCAAAAAGCAAAAGAATTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACATACTAATAA  >  CP000730/551544‑551823

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.