New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	551684 =	38 (1.030)	4 (0.110)	3/244	NT	11.1%	intergenic (+13/‑203)	cysK/sul	cysteine synthase/dihydropteroate synthase, subunit A
	?	CP000730	551723 =	28 (0.800)					intergenic (+52/‑164)	cysK/sul	cysteine synthase/dihydropteroate synthase, subunit A

AATTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACATACTAATAACTAGTAAATAGCAGGAGTAAATTTTATTAGAGTTAAACA  >  CP000730/551583‑551862                                                                                                                                             |                                                                                                                                            aaTTAGGAAAAGTTAAAACACTAGTAACAGTATTGCCGAGAAATGGTGAACGCTACTTATCAACACCTTTATATTTATTCGATGACTCTTTAATCTCTTTTAAAAGAGTGAGTTATCTTTTTGAGTTAACTTGCTCttttt                                                                                                                                             <  2:84346/141‑1 (MQ=255) aaTTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATATAATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCttttt                                                                                                                                             <  2:29447/141‑1 (MQ=255)  aTTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCtttttt                                                                                                                                            <  2:76373/141‑1 (MQ=255)       gAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTAc                                                                                                                                       >  2:71330/1‑141 (MQ=255)         atgtacgtttattatcttatcattcactggatatttttatcagaaaaatgtttaatttaacgctcatatttttaaaaatatacatggtagaaaaaaagagtgagttatctttttgagataacttgctcttttTTTCTACCa                                                                                                                                     <  2:328785‑M2/9‑1 (MQ=255)         atgtacgtttattatcttatcattcactggatatttttatcagaaaaatgtttaatttaacgctcatatttttaaaaatatacatggtagaaaaaaagagtgagttatctttttgagataacttgctcttttTTTCTACCa                                                                                                                                     <  2:21326‑M2/9‑1 (MQ=255)          tgtacgtttattatcttatcattcactagatatttttataagaaaaatgtttaatttaacgctcatatttttaaaaatatacatggtagaaaaaaagagtgagttatctttttgagataacttgctcttttTTTCTACCAt                                                                                                                                    <  2:240964‑M2/10‑1 (MQ=255)           aGGTAAAACAGTGGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATg                                                                                                                                   <  2:366805/141‑1 (MQ=255)           aGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATg                                                                                                                                   <  1:85053/141‑1 (MQ=255)            ggTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGt                                                                                                                                  >  1:226789/1‑141 (MQ=255)            ggTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGt                                                                                                                                  >  1:360302/1‑141 (MQ=255)              tAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGtat                                                                                                                                >  2:191459/1‑141 (MQ=255)                       agtaACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGCTAACTTGCTCTTTTTTTCTACCATGTATATTTTTaaa                                                                                                                       >  1:17368/1‑141 (MQ=255)                             aGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTACATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATg                                                                                                                 <  2:424152/141‑1 (MQ=255)                                  tGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGt                                                                                                            <  1:145054/141‑1 (MQ=255)                                  tGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTATTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGt                                                                                                            <  2:98928/141‑1 (MQ=255)                                   gCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTTAGATAACTTGCTCTTTTTTTTTTTCATGTATATTTTTAATAATATGAGCGtt                                                                                                           >  2:125716/1‑141 (MQ=255)                                      gcgTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTTATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGttaaa                                                                                                        >  2:326794/3‑141 (MQ=255)                                            tGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAAc                                                                                                  >  2:452390/1‑141 (MQ=255)                                             ggTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACa                                                                                                 >  1:229253/1‑141 (MQ=255)                                                      tACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGa                                                                                        <  2:56717/141‑1 (MQ=255)                                                           aTCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATaaaa                                                                                   <  1:110545/141‑1 (MQ=255)                                                              aaCACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTCACTGCAACATGTTTCTGATAAAAata                                                                                <  2:457747/141‑1 (MQ=255)                                                                  ccTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCa                                                                            >  1:381618/1‑141 (MQ=255)                                                                        tatTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGCAt                                                                      >  2:334355/1‑141 (MQ=255)                                                                              ttcGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTTATAAAAATATCCAGTGAATgataag                                                                <  2:196859/141‑1 (MQ=255)                                                                                        aattaatGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAAcc                                                      >  2:239843/1‑140 (MQ=255)                                                                                            atggtagaaaAAAAGAGCAAGTTATCTCAAAAAGATAACTCACTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTTATAAAAATATCTAGTGAATGATAAGATAATAAACGTACa                                                  <  2:240964‑M1/131‑1 (MQ=255)                                                                                             tggtagaaaAAAAGAGCAAGTTATCTCAAAAAGATAACTCACTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACAt                                                 <  2:21326‑M1/132‑1 (MQ=255)                                                                                             tggtagaaaAAAAGAGCAAGTTATCTCAAAAAGATAACTCACTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACAt                                                 <  2:328785‑M1/132‑1 (MQ=255)                                                                                             atGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTTTAATTATGTGCGTTAAATTAAACATTTTTCTGATAAAAATATACAGTGAATGATAAGATAATAAACGTACAt                                                 >  2:177073/1‑141 (MQ=255)                                                                                             atGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTACTACCTTGTATATTTGTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACAt                                                 <  1:316792/141‑1 (MQ=255)                                                                                              tGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACATa                                                <  1:30357/141‑1 (MQ=255)                                                                                                     tAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTTTACCTTGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTGTGATTAAAATATCCAGTGAATTATAAGATAAGTAACGTACAtactaagaa                                         <  2:83680‑M1/140‑4 (MQ=255)                                                                                                       aaagagcaagttatctcaaaaagataactcactcttttTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACATACTAATAACt                                       >  1:198349‑M2/39‑141 (MQ=255)                                                                                                         AGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACATACTAATAACTAg                                     >  1:98174‑M1/1‑141 (MQ=255)                                                                                                          GAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACATACTAATAACTAGt                                    >  1:223065‑M1/1‑141 (MQ=255)                                                                                                                 ttATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACATACTAATAACTAGTAAATAGc                             >  1:184647/1‑141 (MQ=255)                                                                                                                  tATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACATACTAATAACTAGTAAATAGCa                            >  1:44705/1‑141 (MQ=255)                                                                                                                          tGAGATAACTTGCTCTTTTTTTTTTTTTTTTTTATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACATACTAATAACTAGTAATTATCAGGAGTaaa                    >  2:72963/1‑141 (MQ=255)                                                                                                                            agaTAACTTGCTCTTTTTTTCTACAATGTATATTTTTAAAAATAGGAGCGTTACATTTAACTTTTTTCCGATAAAAATATCAAGTGAATAATTAGATCATAATCGTACATACTAATAACTAGTAAATAgatcgattttagt                  >  2:185754/1‑129 (MQ=255)                                                                                                                                    tGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACATACTAATAACTAGTAAATAGCAGGAGTAAATTTTATTaga          <  2:289007/141‑1 (MQ=255)                                                                                                                                     gCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACATACTAATAACTAGTAAATAGCAGGAGTAAATTTTATTagag         <  1:93402/141‑1 (MQ=255)                                                                                                                                            tTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACATACTAATAACTAGTAAATAGCAGGAGTAAATTTTATTAGAGTTAAACa  >  1:117067‑M2/2‑141 (MQ=255)                                                                                                                                             |                                                                                                                                            AATTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACATACTAATAACTAGTAAATAGCAGGAGTAAATTTTATTAGAGTTAAACA  >  CP000730/551583‑551862

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.