New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2080223 =	20 (0.560)	3 (0.090)	3/264	3.4	13.4%	intergenic (‑56/+133)	bcrA/USA300HOU_1938	GntR family transcriptional regulator/hypothetical protein
	?	CP000730	= 2080217	20 (0.590)					intergenic (‑50/+139)	bcrA/USA300HOU_1938	GntR family transcriptional regulator/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAGACATTCGTTTTAGCAGTCTTTTTTATTGAAGTAGACAATGCAAGATTAAATGGTAGTGTCATTTCATTTTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2080298‑2080223 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attttattCAACTGCTAGTAATACAATACTCAGTGTTATTTCTGAAGACTGGTTGATAATGAGACATGCATATTTAC  <  CP000730/2080217‑2080149                                                                                                                                                   AAGACATTCGTTTTAGCAGTCTTTTTTATTGAAGTAGACAATGCAAGATTAAATGGTAGTGTCATTTCATTTTATTCAACTGCTAGTAATACAATACTCAGTGTTATTTCTGAAGACTGGTTGATAATGAGACATGCATAT      <  1:400954/141‑1   GACATTCGTTTTAGCAGTCTTTTTTATTGAAGTAGACAATGCAAGATTAAATGGTAGTGTCATTTCATTTTATTCAACTGCTAGTAATACAATACTCAGTGTTATTTCTGAAGACTGGTTGATAATG‑GACATGCATATTTA   <  1:381470/141‑1    ACATTCGTTTTAGCAGTCTTTTTTATTGAAGTAGACAATGCAAGATTAAATGGTAGTGTCATTTCATTTTATTCAACTGCTAGTAATACAATACTCAGTGTTATTTCTGAAGACTGGTTGATAATG‑GACATGCATATTTAC  <  1:204676/141‑1                                                                                                                                                   AAGACATTCGTTTTAGCAGTCTTTTTTATTGAAGTAGACAATGCAAGATTAAATGGTAGTGTCATTTCATTTTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2080298‑2080223 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attttattCAACTGCTAGTAATACAATACTCAGTGTTATTTCTGAAGACTGGTTGATAATGAGACATGCATATTTAC  <  CP000730/2080217‑2080149

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.