New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2080223 =	20 (0.560)	3 (0.090)	3/264	3.4	13.4%	intergenic (‑56/+133)	bcrA/USA300HOU_1938	GntR family transcriptional regulator/hypothetical protein
	?	CP000730	= 2080217	20 (0.590)					intergenic (‑50/+139)	bcrA/USA300HOU_1938	GntR family transcriptional regulator/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGTATATATACAATATACACAATATACACAGTTTTGTAAATATGCATGTCTCATTATCAACCAGTCTTCAGAAATAACACTGAGTATTGTATTACTAGCAGTTGAATAAAATAAAATGAAATGACACTACCATTTAATCTTGCATTGTCTACTTCAATAAAAAAGACTGCTAAAACGAATGTCTTTAATCTCTACGTGACAACCGTAGCGTCAACATAAACAATCGTTTTAAAC  >  CP000730/2080114‑2080347                                                                                                        |                                                                                                                                   tgtatattgtatatatacacaatatacacaGTTTTGTAAATATGCATGTCTCATTATCAACCAGTCTTCAGAAATAACACTGAGTATTGTATTACTAGCAGTTGAATAAAATAAAATGAACTGCCACTACCATTTAATCtt                                                                                               >  2:318378/13‑141 (MQ=255)           caatatacacaatatacaCAGTTTTGTAAATATGCATGTCTCATTATCAACCAGTCTTCAGAAATAACACTGAGTATTGTATTACTAGCAGTTGAATAAAATAAAATAAAATGACACTACCA‑TTAATCTTGCATTGTCTAc                                                                                    <  1:366062/141‑1 (MQ=255)               atacacaatatacacaGTTTTGTAAATATGCATGTCTCATTATCAACCAGTCTTCAGAAATAACACTGAGTATTGTATTACTAGCAGTTGAATAAAATAAAATGAAATGACACTACCATTTAATCTTGCATTGTCTACTTc                                                                                 <  1:133695/141‑1 (MQ=255)               atacacaatatacacaGTTTTGTAAATATGCATGTCTCATTATCAACCAGTCTTCAGAAATAACACTGAGTATTGTATTACTAGCAGTTGAATAAAATAAAATGAAATGACACTACCATTTAATCTTGCATTGTCTACTTc                                                                                 <  1:183418/141‑1 (MQ=255)                    caatatacacaGTTTTGTAAATATGCATGTCTCATTATCAACCAGTCTTCAGAAATAACACTGAGTATTGTATTACTAGCAGTTGAATAAAATAAAATGAAATGACACTACCATTTAATCTTGCATTGTCTACTTCAATaa                                                                            >  1:183451/1‑141 (MQ=255)                          acacaGTTTTGTAAATATGCATGTCTCATTATCAACCAGTCTTCAGAAATAACACTGAGTATTGTATTACTAGCAGTTGAATAAAATAAAATGAAATGACACTACCATTTAATCTTGCATTGTCTACTTCAATAAAAAAGa                                                                      <  1:326381/141‑1 (MQ=255)                           cacaGTTTTGTAAATATGCATGTCTCATTATCAACCAGTCTTCAGAAATAACACTGAGTATTGTATTACTAGCAGTTGAATAAAATAAAATGAAATGACACTACCATTTAATCTCGCATTGTCTACTTCAATAAAAAAGAc                                                                     >  2:369010/1‑141 (MQ=255)                               gTTTTGTAAATATGCATGTCTCATTATCAACCAGTCTTCAGAAATAACACTGAGTATTGTATTACTAGCAGTTGAATAAAATAAAATGAAATGACACTACCATTTAATCTTGCATTGTCTACTTCAATAAAAAAGACTGCt                                                                 >  2:162620/1‑141 (MQ=255)                                    gTAAATATGCATGTCTCATTATCAACCAGTCTTCAGAAATAACACTGAGTATTGTATTACTAGCAGTTGAATAAAATAAAATGAAATGACACTACCATTTAATCTTGCATTGTCTACTTCAATAAAAAAGACTGCTAAAAc                                                            <  1:236382/141‑1 (MQ=255)                                    gTAAATATGCATGTCTCATTATCAACCAGTCTTCAGAAATAACACTGAGTATTGTATTACTAGCAGTTGAATAAAATAAAATGAAATGACACTACCATTTAATCTTGCATTGTCTACTTCAATAAAAAAGACTGCTAAAAc                                                            <  1:390699/141‑1 (MQ=255)                                    gTAAATATGCATGTC‑CATTATCAACCAGTCTTCAGAAATAACACTGAGTATTGTATTACTAGCAGTTG‑‑‑‑‑AATAAAATGAAATGACACTACCATTTAATCTTGCATTGTCTACTTCAATAAAAAAGACTGCTAAAACGAATGt                                                      >  1:204676/1‑141 (MQ=255)                                     tAAATATGCATGTC‑CATTATCAACCAGTCTTCAGAAATAACACTGAGTATTGTATTACTAGCAGTTG‑‑‑‑‑AATAAAATGAAATGACACTACCATTTAATCTTGCATTGTCTACTTCAATAAAAAAGACTGCTAAAACGAATGTc                                                     >  1:381470/1‑141 (MQ=255)                                        atatGCATGTCTCATTATCAACCAGTCTTCAGAAATAACACTGAGTATTGTATTACTAGCAGTTG‑‑‑‑‑AATAAAATGAAATGACACTACCATTTAATCTTGCATTGTCTACTTCAATAAAAAAGACTGCTAAAACGAATGTCtt                                                   >  1:400954/1‑141 (MQ=255)                                             cATGTCTCATTATCAACCAGTCTTCAGAAATAACACTGAGTATTGTATTACTAGCAGTTGAATAAAATAAAATGAAATGACACTACCATTTAATCTTGCATTGTCTACTTCAATAAAAAAGACTGCTAAAACGAATGTCtt                                                   <  2:147279/141‑1 (MQ=255)                                             cATGTCTCATTATCAACCAGTCTTCAGAAATAACACTGAGTATTGTATTACTAGCAGTTGAATAAAATAAAATGAAATGACACTACCATTTAATCTTGCATTGTCTACTTCAATAAAAAAGACTGCTAAAACGAATGTCtt                                                   >  1:347600/1‑141 (MQ=255)                                                 tctcATTATCAACCAGTCTTCAGAAATAACACTGAGTATTGTATTACTAGCAGTTGAATAAAATAAAATGAAATGACACTACCATTTAATCTTGCATTGTCTACTTCAATAAAAAAGACTGCTAAAACGAATGTCTTTAAt                                               <  2:19305/141‑1 (MQ=255)                                                 tctcATTATCAACCAGTCTTCAGAAATAACACTGAGTATTGTATTACTAGCAGTTGAATAAAATAAAATGAAATGACACTACCATTTAATCTTGCATTGTCTACTTCAATAAAAAAGACTGCTAAAACGAATGTCTTTAAt                                               <  2:52178/141‑1 (MQ=255)                                                                         aaTAACACTGAGTATTGTATTACTAGCAGTTGAATAAAATAAAATGAAATGACACTACCATTTAATCTTGCATTGTCTACTTCAATAAAAAAGACTGCTAAAACGAATGTCTTTAATCTCTACGTGACAACCGTAGCGTCa                       >  2:134270/1‑141 (MQ=255)                                                                               acTGAGTATTGTATTACTAGCAGTTGAATAAAATAAAATGAAATGACACTACCATTTAATCTTGCATTGTCTACTTCAATAAAAAAGACTGCTAAAACGAATGTCTTTAATCTCTACGTGACAACCGTAGCGTCAACATaa                 <  2:347600/141‑1 (MQ=255)                                                                                        tgtattACTAGCAGTTGAATAAAATAAAATGAAATGACACTACCATTTAATCTTGCATTGTCTACTTCAATAAAAAAGACTGCTAAAACGAATGTCTTTAATCTCTACGTGACAACCGTAGCGTCAACATAAACAATCGtt        >  2:90431/1‑141 (MQ=255)                                                                                           attACTAGCAGTTGAATAAAATAAAATGAAATGACACGACCATTTAATCTTGCATTGTCTACTTCAATAAAAAAGACTGCTAAAACGAATGTCTTTAATCTCTACGTGACAACCGTAGCGTCAACATAAACAATCGTTTTa     <  1:150698/141‑1 (MQ=255)                                                                                              aCTAGCAGTTGAATAAAATAAAATGAAATGACACTACCATTTAATCTTGCATTGTCTACTTCAATAAAAAAGACTGCTAAAACGAATGTCTTTAATCTCTACGTGACAACCGTAGCGTCAACATAAACAATCGTTTTAAAc  >  2:400470/1‑141 (MQ=255)                                                                                              aCTAGCAGTTGAATAAAATAAAATGAAATGACACTACCATTTAATCTTGCATTGTCTACTTCAATAAAAAAGACTGCTAAAACGAATGTCTTTAATCTCTACGTGACAACCGTAGCGTCAACATAAACAATCGTTTTAAAc  >  2:31240/1‑141 (MQ=255)                                                                                                        |                                                                                                                                   TGTATATATACAATATACACAATATACACAGTTTTGTAAATATGCATGTCTCATTATCAACCAGTCTTCAGAAATAACACTGAGTATTGTATTACTAGCAGTTGAATAAAATAAAATGAAATGACACTACCATTTAATCTTGCATTGTCTACTTCAATAAAAAAGACTGCTAAAACGAATGTCTTTAATCTCTACGTGACAACCGTAGCGTCAACATAAACAATCGTTTTAAAC  >  CP000730/2080114‑2080347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.