New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2278955 =	39 (1.090)	4 (0.150) +CCCAGTTGCAAACAATAAAGCTAAAGATATGCAA	3/212	2.8	11.7%	intergenic (+623/+7409)	mtlD/glmM	mannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase
	?	CP000730	= 2278980	41 (1.140)					intergenic (+648/+7384)	mtlD/glmM	mannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase
Rejected: Frequency below/above cutoff threshold.

TCTTCTGAAGCAAAAGAAAAAATGACTTCAACTAATGTTAGCCAAAAAGATGATACGGCAACAGCAGATACTAATGATACGCAAAAATCAGTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2279049‑2278955 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACTAATGATACGCAAAAATCAGTTGGTTCAGCTGCAAACAATAAAGCTACGCAAAACGACGGTGCCAATGCAT  <  CP000730/2278980‑2278908                                                                                                ||||||||||||||||||||||||||||||||||                                                                          TCTTCTGAAGCAAAAGATAAAATGACTTCAACTAATGTTAGCCAAAAAGATGATACGGCAACAGCAGATACTAATGATACGCAAAAATCAGTTGGCCCAGTTGCAAACAATAAAGCTAAAGATATGCAAACTAATGATACG                                                               >  2:193641/1‑141                                                 GATGATACGGCAACAGCAGATACTAATGATACGCAAAAATCAGTTGGCCCAGTTGCAAACAATAAAGCTAAAGATATGCAAACTAATGATACGCAAAAATCAGTTGGTTCAGCTGCAAACAATAAAGCTACGCAAAACGAC               <  1:147583/141‑1                                                 GATGATACGGCAACAGCAGATACTAATGATACGCAAAAATCAGTTGGCCCAGTTGCAAACAATAAAGCTAAAGATATGCAAACTAATGATACGCAAAAATCAGTTGGTTCAGCTGCAAACAATAAAGCTACGCAAAACGAC               <  1:282755/141‑1                                                              CAGCAGATACTAATGATACGCAAAAATCAGTTGGCCCAGTTGCAAACAATAAAGCTAAAGATATGCAAACTAATGATACGCAAAAATCAGTTGGTTCAGCTGCAAACAATAAAGCTACGCAAAACGACGGTGCCAATGCAT  <  1:193641/141‑1                                                                                                ||||||||||||||||||||||||||||||||||                                                                          TCTTCTGAAGCAAAAGAAAAAATGACTTCAACTAATGTTAGCCAAAAAGATGATACGGCAACAGCAGATACTAATGATACGCAAAAATCAGTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2279049‑2278955 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACTAATGATACGCAAAAATCAGTTGGTTCAGCTGCAAACAATAAAGCTACGCAAAACGACGGTGCCAATGCAT  <  CP000730/2278980‑2278908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.