New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2278955 =	39 (1.090)	4 (0.150) +CCCAGTTGCAAACAATAAAGCTAAAGATATGCAA	3/212	2.8	11.7%	intergenic (+623/+7409)	mtlD/glmM	mannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase
	?	CP000730	= 2278980	41 (1.140)					intergenic (+648/+7384)	mtlD/glmM	mannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase
Rejected: Frequency below/above cutoff threshold.

TAGTTACATTAAGCATATCTTGATTAGCACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGATGGTTTATTCGAAACTTCAGTATCAGCTTTGCTTGGCGATTTATCTGCTTCGTTAGAT  >  CP000730/2278848‑2279119                                                                                                                                     |                                                                                                                                            atgcattggcaccgtcgttttgcgtagctttattgtttgcagctgaaccaactgatttttgcgtatcattagtttgcatatctttagctttattgtttgcaactgggCCAACTGATTTTTGCGTATCATTAGTATctgctg                                                                                                                                     <  1:193641‑M1/34‑1 (MQ=255)          tAAGCATATCTTGATCAGCACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTat                                                                                                                            <  1:232151/141‑1 (MQ=255)             gCATATCTTGATTAGCACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTatcat                                                                                                                         >  2:404521/1‑141 (MQ=255)              gtcgttttgcgtagctttattgtttgcagctgaaccaactgatttttgcgtatcattagtttgcatatctttagctttattgtttgcaactgggCCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTatcatc                                                                                                                        <  1:147583‑M1/47‑1 (MQ=255)              gtcgttttgcgtagctttattgtttgcagctgaaccaactgatttttgcgtatcattagtttgcatatctttagctttattgtttgcaactgggCCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTatcatc                                                                                                                        <  1:282755‑M1/47‑1 (MQ=255)                         tAGCACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTaa                                                                                                             <  1:140838/141‑1 (MQ=255)                         tAGCACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTaa                                                                                                             <  1:331568/141‑1 (MQ=255)                         tAGCACTATTGCTTCCATTTGAAACGGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATTATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTaa                                                                                                             <  1:88984/141‑1 (MQ=255)                            cACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACAt                                                                                                          <  1:249482/141‑1 (MQ=255)                             aCTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACAtt                                                                                                         >  1:82504/1‑141 (MQ=255)                                aTTGCTTCCATTTGAAACTGTAGCTGGAGCTGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGt                                                                                                      <  1:26297/141‑1 (MQ=255)                                aTTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGt                                                                                                      <  1:402860/141‑1 (MQ=255)                                  tGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTg                                                                                                    <  1:398274/141‑1 (MQ=255)                                  tGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTg                                                                                                    <  1:171892/141‑1 (MQ=255)                                        cATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCa                                                                                              >  1:311470/1‑141 (MQ=255)                                        cATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCa                                                                                              >  1:161301/1‑141 (MQ=255)                                         aTTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCAt                                                                                             <  1:232715/141‑1 (MQ=255)                                         aTTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCAt                                                                                             <  1:94516/141‑1 (MQ=255)                                         aTTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCAt                                                                                             <  1:35130/141‑1 (MQ=255)                                         aTTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCAt                                                                                             <  1:373968/141‑1 (MQ=255)                                               aaCTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGGTTTTTGCGTATCATTATTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTc                                                                                       <  1:143603/141‑1 (MQ=255)                                                       cTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCtt                                                                               >  1:284669/1‑141 (MQ=255)                                                           agaTGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCaga                                                                           >  1:291827/1‑141 (MQ=255)                                                           agaTGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCaga                                                                           >  2:229892/1‑141 (MQ=255)                                                           agaTGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCaga                                                                           >  2:93661/1‑141 (MQ=255)                                                             aTGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTttgcatatctttagctttattgtttgcaactgggccaactgatttttgcgtatcattagtatctgctg                                                                         <  1:193641‑M2/141‑69 (MQ=255)                                                              cgtatcattagtttgcatatctttagctttattgtttgcaactgggCCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTATCTTTTGCTTCagaaga                                                                        >  2:193641‑M1/47‑141 (MQ=255)                                                                cATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATg                                                                      >  1:27744/1‑141 (MQ=255)                                                                cATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATg                                                                      >  1:225974/1‑141 (MQ=255)                                                                          gtcgtTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTttgcatatctttagctttattgtttgcaactgggccaactgatttttgcgtatcattagtatctgctgttgccgtatcatc                                                            <  1:282755‑M2/141‑82 (MQ=255)                                                                          gtcgtTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTttgcatatctttagctttattgtttgcaactgggccaactgatttttgcgtatcattagtatctgctgttgccgtatcatc                                                            <  1:147583‑M2/141‑82 (MQ=255)                                                                          gtcgtTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGa                                                            >  1:203644/1‑141 (MQ=255)                                                                          gtcgtTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGa                                                            >  1:47340/1‑141 (MQ=255)                                                                               tttGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGATGGtt                                                       <  1:389164/141‑1 (MQ=255)                                                                                    gTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGATGGTTTATTc                                                  <  1:194780/141‑1 (MQ=255)                                                                                    gTAGCTTTATTGTTTGAAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTCCTTTTGCTTCAGAAGATGCAGATGTTGATGGTTTATTc                                                  <  1:322502/141‑1 (MQ=255)                                                                                                              aaCTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGATGGTTTATTCGAAACTTCAGTATCAGCTTTGCTTgg                        <  1:346542/141‑1 (MQ=255)                                                                                                                   ttttttGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGATGGTTTATTCGAAACTTCAGTATCAGCTTTGCTTGGCGAtt                   <  2:16397/140‑1 (MQ=255)                                                                                                                   aTTTTTGCGTATCATTAGTATCTGCTGTTGTCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGATGGTTTATTCGAAACTTCAGTATCAGCTTTGCTTGGCGAtt                   <  1:273932/141‑1 (MQ=255)                                                                                                                    tttttGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGATGGTTTATTCGAAACTTCAGTATCAGCTTTGCTTGGCGAttt                  <  1:72108/141‑1 (MQ=255)                                                                                                                     ttttGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGATGGTTTATTCGAAACTTCAGTATCAGCTTTGCTTGGCGATTTa                 <  2:27744/141‑1 (MQ=255)                                                                                                                     ttttGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGATGGTTTATTCGAAACTTCAGTATCAGCTTTGCTTGGCGATTTa                 <  2:225974/141‑1 (MQ=255)                                                                                                                         gCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGATGGTTTATTCGAAACTTCAGTATCAGCTTTGCTTGGCGATTTATCTg             >  1:366715/1‑141 (MQ=255)                                                                                                                         gCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGATGGTTTATTCGAAACTTCAGTATCAGCTTTGCTTGGCGATTTATCTg             >  1:140037/1‑141 (MQ=255)                                                                                                                          cGTATCATTAGTttgcatatctttagctttattgtttgcaactgggccaactgatttttgcgtatcattagtatctgctgttgccgtatcatctttttggctaacattagttgaagtcattttatcttttgcttcagaaga            >  2:193641‑M2/1‑12 (MQ=255)                                                                                                                             ttCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGATGGTTTATTCGATACTTCAGTATCAGCTTTGCTTGGCGATTTATCTGCTTc         <  2:283004/140‑1 (MQ=255)                                                                                                                                aTTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGATGGTTTATTCGAAACTTCAGTATCAGCTTTGCTTGGCGATTTATCTGCTTCGtt      <  2:284669/141‑1 (MQ=255)                                                                                                                                    gTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTTTTTCAGAAGATGCAGATGTTGATGGTTTATTCGAAACTTCAGTATCAGCTTTGCTTGGCGATTTATCTGCTTCGTTAGAt  >  2:47833/1‑141 (MQ=255)                                                                                                                                    gTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGATGGTTTATTCGAAACTTCAGTATCAGCTTTGCTTGGCGATTTATCTGCTTCGTTAGAt  >  2:188944/1‑141 (MQ=255)                                                                                                                                     |                                                                                                                                            TAGTTACATTAAGCATATCTTGATTAGCACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGATGGTTTATTCGAAACTTCAGTATCAGCTTTGCTTGGCGATTTATCTGCTTCGTTAGAT  >  CP000730/2278848‑2279119

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.