New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2731894	28 (0.830)	5 (0.150) +ATTATAAACA	4/242	2.7	15.2%	coding (55/99 nt)	USA300HOU_2589	hypothetical protein
	?	CP000730	2731895 =	30 (0.840)					coding (54/99 nt)	USA300HOU_2589	hypothetical protein
Rejected: Frequency below/above cutoff threshold.

AAATCTGCAATTTGTTGCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACAAACAAACAGAAAAAGGTGATAACAATGAACCAACATTTACTAGGAAA  >  CP000730/2731760‑2732027                                                                                                                                       |                                                                                                                                      aaaTCTGCAATTTGTTGCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGattata                                                                                                                                 <  1:143180‑M1/141‑7 (MQ=255)     cTGCAATTTGTTGCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACg                                                                                                                             <  1:304187/141‑1 (MQ=255)      tGCAATTTGTTGCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGt                                                                                                                            <  1:385666/141‑1 (MQ=255)      tGCAATTTGTTGCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGt                                                                                                                            <  2:265873/141‑1 (MQ=255)      tGCAATTTGTTGCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGt                                                                                                                            <  2:308263/141‑1 (MQ=255)      tGCAATTTGTTGCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGt                                                                                                                            <  1:280403/141‑1 (MQ=255)       gCAATTTGTTGCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGattataaacaat                                                                                                                           >  1:320248‑M1/1‑129 (MQ=255)            ttgttgCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGattataaacaattataa                                                                                                                      <  2:253202‑M1/141‑18 (MQ=255)                 gCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAATTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTa                                                                                                                 >  2:118165/1‑141 (MQ=255)                           ctctTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAAt                                                                                                       >  2:31558/1‑141 (MQ=255)                            tcttctAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAAtc                                                                                                      >  2:232592/1‑141 (MQ=255)                                  aaTTGGTGTTGATGTAAAAGAGCAATAAATGCATTGCTCATTGAAACTTGTGAGTTTATAATAAGTCGATCTATAGTCATTTATATCAAGTCCTAGCAAATGATTTTAAACGTTATGTTCATTATCCAACAAATCTACaaa                                                                                                >  2:207777/1‑140 (MQ=255)                                   aTTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACa                                                                                               <  2:316073/141‑1 (MQ=255)                                     tGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACAtt                                                                                             >  1:258067/1‑141 (MQ=255)                                        tgtTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACACATCTCCAACATtgat                                                                                          >  2:406354/1‑141 (MQ=255)                                                  aaaGTTCAATAAATGCATTTCTCATCGAAAAATGGGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCACACAAATCTCCAACATTGATGATTGGcaca                                                                                >  2:18915/1‑141 (MQ=255)                                                   aaGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGcacac                                                                               <  1:187041/141‑1 (MQ=255)                                                            aaaTGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTAc                                                                      >  2:286807/1‑141 (MQ=255)                                                               tGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTg                                                                   <  2:5096/141‑1 (MQ=255)                                                                gCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGt                                                                  >  1:52311/1‑141 (MQ=255)                                                                  aTTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGattataaacaattataaacgttatgttcattatcccacaaatctccaacattgatgattggcacacaatgt                                                                >  1:13316‑M1/1‑70 (MQ=255)                                                                     tctcATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAat                                                             <  2:182678/141‑1 (MQ=255)                                                                           tGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGt                                                       <  1:23445/141‑1 (MQ=255)                                                                           tGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGt                                                       >  2:367866/1‑141 (MQ=255)                                                                           tGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGt                                                       <  1:332901/141‑1 (MQ=255)                                                                                cTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATac                                                  >  1:93441/1‑141 (MQ=255)                                                                                     gATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGattataaacaattataaacgttatgttcattatcccacaaatctccaacattgatgattggcacacaatgtttacctgtttaatataggt                                             <  2:320248‑M1/141‑91 (MQ=255)                                                                                        tttCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACaaacaaac                                          <  1:97578/141‑1 (MQ=255)                                                                                                     gATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACAAACAAACAGAAAAAGGTGAt                             <  1:118165/141‑1 (MQ=255)                                                                                                           taGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACAAACAAACAGAAAAAGGTGATAACAAt                       >  2:113625/1‑141 (MQ=255)                                                                                                           taGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACAAACAAACAGAAAAAGGTGATAACAAt                       >  2:263421/1‑141 (MQ=255)                                                                                                                      atCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACAAACAAACAGAAAAAGGTGATAACAATGAACCAACAtt            >  2:391473/1‑141 (MQ=255)                                                                                                                              ctccCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACAAACAAACAGAAAAAGGTGATAACAATGAACCAACATTTACTAGGa    >  2:173974/1‑141 (MQ=255)                                                                                                                                ccccAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACTAACAAACAGAAAAAGGTGATAACAATGAACCAACATTTACTAGGaaa  >  1:224937/1‑141 (MQ=255)                                                                                                                                ccccAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACAAACAAACAGAAAAAGGTGATAACAATGAACCAACATTTACTAGGaaa  <  1:198551/141‑1 (MQ=255)                                                                                                                                       |                                                                                                                                      AAATCTGCAATTTGTTGCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACAAACAAACAGAAAAAGGTGATAACAATGAACCAACATTTACTAGGAAA  >  CP000730/2731760‑2732027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.