New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2731894	28 (0.830)	5 (0.150) +ATTATAAACA	4/242	2.7	15.2%	coding (55/99 nt)	USA300HOU_2589	hypothetical protein
	?	CP000730	2731895 =	30 (0.840)					coding (54/99 nt)	USA300HOU_2589	hypothetical protein
Rejected: Frequency below/above cutoff threshold.

AGCTAAATCTGCAATTTGTTGCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACAAACAAACAGAAAAAGGTGATAACAATGAACCAACATTTACTAGGAAATCCAAAAT  >  CP000730/2731756‑2732035                                                                                                                                            |                                                                                                                                             gcaatttgttgcacagtaatctcttctaattggtgttgatgtaaaagttcaataaatgcatttctcattgcaacttgtgattttctaatacgtcgatctatagtcatttatatcaagtcctccccaatgattataaacaAt                                                                                                                                             >  1:320248‑M2/140‑141 (MQ=255)      ttgttgcacagtaatctcttctaattggtgttgatgtaaaagttcaataaatgcatttctcattgcaacttgtgattttctaatacgtcgatctatagtcatttatatcaagtcctccccaatgattataaacaATTATaa                                                                                                                                        <  2:253202‑M2/7‑1 (MQ=255)         cTGCAATTTGTTGCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACg                                                                                                                                     <  1:304187/141‑1 (MQ=255)          tGCAATTTGTTGCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGt                                                                                                                                    <  2:308263/141‑1 (MQ=255)          tGCAATTTGTTGCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGt                                                                                                                                    <  1:385666/141‑1 (MQ=255)          tGCAATTTGTTGCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGt                                                                                                                                    <  2:265873/141‑1 (MQ=255)          tGCAATTTGTTGCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGt                                                                                                                                    <  1:280403/141‑1 (MQ=255)                     gCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAATTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTa                                                                                                                         >  2:118165/1‑141 (MQ=255)                               ctctTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAAt                                                                                                               >  2:31558/1‑141 (MQ=255)                                tcttctAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAAtc                                                                                                              >  2:232592/1‑141 (MQ=255)                                      aaTTGGTGTTGATGTAAAAGAGCAATAAATGCATTGCTCATTGAAACTTGTGAGTTTATAATAAGTCGATCTATAGTCATTTATATCAAGTCCTAGCAAATGATTTTAAACGTTATGTTCATTATCCAACAAATCTACaaa                                                                                                        >  2:207777/1‑140 (MQ=255)                                       aTTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACa                                                                                                       <  2:316073/141‑1 (MQ=255)                                         tGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACAtt                                                                                                     >  1:258067/1‑141 (MQ=255)                                            tgtTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACACATCTCCAACATtgat                                                                                                  >  2:406354/1‑141 (MQ=255)                                                      aaaGTTCAATAAATGCATTTCTCATCGAAAAATGGGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCACACAAATCTCCAACATTGATGATTGGcaca                                                                                        >  2:18915/1‑141 (MQ=255)                                                       aaGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGcacac                                                                                       <  1:187041/141‑1 (MQ=255)                                                            atttctcattgcaacttgtgattttctaatacgtcgatctatagtcatttatatcaagtcctccccaatgattataaacaATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGt                                                                                  >  1:13316‑M2/81‑141 (MQ=255)                                                                aaaTGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTAc                                                                              >  2:286807/1‑141 (MQ=255)                                                                   tGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTg                                                                           <  2:5096/141‑1 (MQ=255)                                                                    gCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGt                                                                          >  1:52311/1‑141 (MQ=255)                                                                         tctcATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAat                                                                     <  2:182678/141‑1 (MQ=255)                                                                               tGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGt                                                               <  1:332901/141‑1 (MQ=255)                                                                               tGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGt                                                               <  1:23445/141‑1 (MQ=255)                                                                               tGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGt                                                               >  2:367866/1‑141 (MQ=255)                                                                               gattttctaatacgtcgatctatagtcatttatatcaagtcctccccaatgattataaacaATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGt                                                               <  2:320248‑M2/80‑1 (MQ=255)                                                                                    cTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATac                                                          >  1:93441/1‑141 (MQ=255)                                                                                            tttCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACaaacaaac                                                  <  1:97578/141‑1 (MQ=255)                                                                                                         gATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACAAACAAACAGAAAAAGGTGAt                                     <  1:118165/141‑1 (MQ=255)                                                                                                               taGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACAAACAAACAGAAAAAGGTGATAACAAt                               >  2:263421/1‑141 (MQ=255)                                                                                                               taGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACAAACAAACAGAAAAAGGTGATAACAAt                               >  2:113625/1‑141 (MQ=255)                                                                                                                          atCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACAAACAAACAGAAAAAGGTGATAACAATGAACCAACAtt                    >  2:391473/1‑141 (MQ=255)                                                                                                                                  ctccCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACAAACAAACAGAAAAAGGTGATAACAATGAACCAACATTTACTAGGa            >  2:173974/1‑141 (MQ=255)                                                                                                                                    ccccAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACTAACAAACAGAAAAAGGTGATAACAATGAACCAACATTTACTAGGaaa          >  1:224937/1‑141 (MQ=255)                                                                                                                                    ccccAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACAAACAAACAGAAAAAGGTGATAACAATGAACCAACATTTACTAGGaaa          <  1:198551/141‑1 (MQ=255)                                                                                                                                            aTTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACAAACAAACAGAAAAAGGTGATAACAATGAACCAACATTTACTAGGAAATCCAAAAt  <  2:13316/141‑1 (MQ=255)                                                                                                                                            |                                                                                                                                             AGCTAAATCTGCAATTTGTTGCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACAAACAAACAGAAAAAGGTGATAACAATGAACCAACATTTACTAGGAAATCCAAAAT  >  CP000730/2731756‑2732035

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.