| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1873423 | 23 (1.060) | 5 (0.260) | 3/234 | NT | 19.0% | intergenic (‑99/+651) | USA300HOU_1742/USA300HOU_1743 | M20 family peptidase/hypothetical protein |
| ? | CP000730 | = 1873461 | 22 (1.120) | intergenic (‑137/+613) | USA300HOU_1742/USA300HOU_1743 | M20 family peptidase/hypothetical protein | |||||
TAAGTCATTAATGATTTGATCTTCGTATTGTTGAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1873274‑1873423‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaggaacaaaGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTTATTATTTTCTGACATCTTATTGTAGTTTTTATATCTTTTCATGTAAAATAGAATTTAACTTATAGAAAAAAGGAAGTCGATTTCGAATG < CP000730/1873461‑1873322 TAAATCATTAATAATTTAATCTTCGTATTGTTCAACTTTTTCTTTCCACATTCAAAATCAACTTCCTTTTTTCTATTAGTTAAATTCTATTTTACAAAAAAAAAAAAAAAAACTACAATAAGATGTCAGAAAATAATAAAA < 2:129327/141‑1 AGTCATTAATGATTTGATCTTCGTATTGTTGAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAG < 1:111283/141‑1 AGTCATTAATGATTTGATCTTCGTATTGTTGAACTTTTTCTTTCCACATTCGAAATCGACTTCCCTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAG < 1:140043/141‑1 TAATGATTTGATCTTCGTATTGTTGAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAA < 2:106710/141‑1 ATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTT < 1:59576/141‑1 ATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCT < 2:64478/141‑1 ATCAACATCCTTTTTACTATAAGTTAGATTCTATTTTACAAAAAAAGAAAAAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCT < 2:210105/141‑1 TTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTTATTATTTTCT < 2:106516/141‑1 TTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTTATTATTTTCT < 2:116747/141‑1 AAAAGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTTATTATTTTCTGACATCTTATTGTAGTTTTTATATCTTTTCATGTAAAATAGAATTTAACTTATAGAAAAAAGGAAGTC > 1:56250/1‑141 AAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTTATTATTTTCTGACATCTTATTGTAGTTTTTATATCTTTTCATGTAAAA‑AAAATTTAACTTATAAAAAAAAGGAAGTCGAATTCGAAat > 2:27797/1‑139 AGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTTATTATTTTCTGACATCTTATTGTAGTTTTTATATCTTTTCATGTAAAATAGAATTTAACTTATAGAAAAAAGGAAGTCGATTTCGAATG > 2:4379/1‑141 TAAGTCATTAATGATTTGATCTTCGTATTGTTGAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1873274‑1873423‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaggaacaaaGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTTATTATTTTCTGACATCTTATTGTAGTTTTTATATCTTTTCATGTAAAATAGAATTTAACTTATAGAAAAAAGGAAGTCGATTTCGAATG < CP000730/1873461‑1873322 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |