| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1873423 | 23 (1.060) | 5 (0.260) | 3/234 | NT | 19.0% | intergenic (‑99/+651) | USA300HOU_1742/USA300HOU_1743 | M20 family peptidase/hypothetical protein |
| ? | CP000730 | = 1873461 | 22 (1.120) | intergenic (‑137/+613) | USA300HOU_1742/USA300HOU_1743 | M20 family peptidase/hypothetical protein | |||||
TATTGTTGAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAAC > CP000730/1873299‑1873563 | tATTGTTGAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGatat < 1:195101/141‑1 (MQ=255) ttgAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGacac > 1:85933/1‑141 (MQ=255) gAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACaa < 1:49403/141‑1 (MQ=255) gAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACaa < 2:200649/141‑1 (MQ=255) gAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCCATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACaa < 1:138660/141‑1 (MQ=255) cTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATc < 1:156474/141‑1 (MQ=255) ttctttcCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATaa > 1:204849/1‑141 (MQ=255) tttcCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATa > 2:233562/1‑141 (MQ=255) tttcCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATa > 2:39962/1‑141 (MQ=255) tttcCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATa > 1:16827/1‑141 (MQ=255) ttttttCGAAACCGACTTCCCTTTTTCTATAAGTGAAATTCTATTTTACATGAAAAGATATCAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAgctg > 2:54366/5‑141 (MQ=255) cacaTTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAgctg > 1:105243/1‑141 (MQ=255) cATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCt > 2:4379‑M2/1‑140 (MQ=255) atttcgAATTCGACTTCCTTTTTTTTATAAGTTAAATTTT‑TTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCtt > 2:27797‑M2/3‑139 (MQ=255) aTTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAgcagctatttatgatttgtgtcatatcaatagcatcgttt < 1:59576‑M1/141‑41 (MQ=255) aTCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAgcagctatttatgatttgtgtcatatcaatagcatcgttttgttcct < 2:64478‑M1/141‑48 (MQ=255) aTCAACATCCTTTTTACTATAAGTTAGATTCTATTTTACAAAAAAAGAAAAAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAgcagctatttatgatttgtgtcatatcaatagcatcgttttgttcct < 2:210105‑M1/141‑48 (MQ=255) gACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCtttgttcctttt > 1:56250‑M2/1‑129 (MQ=255) ttCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAgcagctatttatgatttgtgtcatatcaatagcatcgttttgttcctttttattattttct < 2:116747‑M1/141‑62 (MQ=255) ttCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAgcagctatttatgatttgtgtcatatcaatagcatcgttttgttcctttttattattttct < 2:106516‑M1/141‑62 (MQ=255) ttAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAAt < 1:7481/141‑1 (MQ=255) atatAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGata < 1:264908/141‑1 (MQ=255) atatAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGata < 2:87966/141‑1 (MQ=255) taAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATaa > 1:190462/1‑141 (MQ=255) taAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATaa > 1:1990/1‑141 (MQ=255) cAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTa > 2:84277/1‑141 (MQ=255) tAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAAAGTACTa > 1:106979/1‑141 (MQ=255) aGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCtttgttcctttttattattttctgacatcttattgtagtttttatatcttttcatgtaaaatagaatttaacttatagaa < 2:116747‑M2/141‑81 (MQ=255) aGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCtttgttcctttttattattttctgacatcttattgtagtttttatatcttttcatgtaaaatagaatttaacttatagaa < 2:106516‑M2/141‑81 (MQ=255) aGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACaa < 1:163583/141‑1 (MQ=255) aaaTAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAAttt > 1:197398/1‑141 (MQ=255) aaaaGGAACAAAgcagctatttatgatttgtgtcatatcaatagcatcgttttgttcctttttattattttctgacatcttattgtagtttttatatcttttcatgtaaaatagaatttaacttatagaaaaaaggaagtc > 1:56250‑M1/1‑12 (MQ=255) aaGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACa < 2:85933/141‑1 (MQ=255) aGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCtttgttcctttttattattttctgacatcttattgtagtttttttttctttttttgtaaaatagaatctaacttatagtaaaaaggatgttgat < 2:210105‑M2/141‑95 (MQ=255) aGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCtttgttcctttttattattttctgacatcttattgtagtttttatatcttttcatgtaaaatagaatttaacttatagaaaaaaggaagtcgat < 2:64478‑M2/141‑95 (MQ=255) aGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAg < 1:225411/141‑1 (MQ=255) aagcagctatttatgatttgtgtcatatcaatagcatcgttttgttcctttttattattttctgacatcttattgtagtttttatatcttttcatgtaaaaaaaatttaacttataaaaaaaaggaagtcgaattcgaaat > 2:27797‑M1/1‑2 (MQ=255) aaaCGATGCTATTGATATGACACAAATCATAAATAGCTGCtttgttcctttttattattttctgacatcttattgtagtttttatatcttttcatgtaaaatagaatttaacttatagaaaaaaggaagtcgatttcgaat < 1:59576‑M2/141‑102 (MQ=255) agcagctatttatgatttgtgtcatatcaatagcatcgttttgttcctttttattattttctgacatcttattgtagtttttatatcttttcatgtaaaatagaatttaacttatagaaaaaaggaagtcgatttcgaatg > 2:4379‑M1/1‑1 (MQ=255) | TATTGTTGAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAAC > CP000730/1873299‑1873563 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |