New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 895785 =28 (0.880)42 (1.520) 33/226 NT 65.5% coding (806/822 nt) USA300HOU_0849 ABC superfamily ATP binding cassette transporter, binding protein
?CP000730 = 909740 20 (0.720)intergenic (‑663/‑371) ear/USA300HOU_0868 Ear protein/hypothetical protein

AAGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATA  >  CP000730/895645‑895925
                                                                                                                                            |                                                                                                                                            
ggttgttttcaagggcaaaaaaagggcatatttttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaat                                                                                                                                              >  2:158284‑M1/141‑141 (MQ=255)
 gttggtttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaatt                                                                                                                                             >  1:2058‑M1/140‑141 (MQ=255)
 aGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGtt                                                                                                                                             <  2:263926/141‑1 (MQ=255)
  ttgttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaatta                                                                                                                                            <  2:311318‑M1/3‑1 (MQ=255)
  ttgttaacaaggaaaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaatta                                                                                                                                            >  2:109707‑M1/139‑141 (MQ=255)
   tgttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaattat                                                                                                                                           <  1:331163‑M1/4‑1 (MQ=255)
     tttgcaagggaaaaaaaaggggataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTc                                                                                                                                         >  1:9758‑M1/136‑141 (MQ=255)
       aaaGAAAATTCTAAAGCAAACATAATTGCTGTAAAAGAAAGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGCAAAATACGATGGTGCAGTTATTCCt                                                                                                                                       <  2:43644/141‑1 (MQ=255)
        tcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTg                                                                                                                                      >  1:223856‑M1/133‑141 (MQ=255)
        tcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTg                                                                                                                                      <  2:327170‑M1/9‑1 (MQ=255)
           aaggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTa                                                                                                                                   >  2:153883‑M1/130‑141 (MQ=255)
              gcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAaat                                                                                                                                >  2:368143‑M1/127‑141 (MQ=255)
                aaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAaataa                                                                                                                              <  2:34910‑M1/17‑1 (MQ=255)
                 aaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAaataat                                                                                                                             >  1:160565‑M1/124‑141 (MQ=255)
                  aaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAataata                                                                                                                            <  1:98541‑M1/19‑1 (MQ=255)
                     aagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctcaTTATTCCCGCTAAATAATACCa                                                                                                                         <  1:163498‑M1/22‑1 (MQ=255)
                           cTTAATTGCTGTCAAAGAAGGAAAACAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaa                                                                                                                   <  2:128831/141‑1 (MQ=255)
                              attttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctcaTTATTCCTGCTAAATAATACCAATtaaataa                                                                                                                >  2:175437‑M1/111‑141 (MQ=255)
                               aTTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAAACAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCACTtaaataaa                                                                                                               >  1:182874/1‑141 (MQ=255)
                                tttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATaaaa                                                                                                              >  1:309049‑M1/109‑141 (MQ=255)
                                ttGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATaaaa                                                                                                              >  1:44064/1‑141 (MQ=255)
                                    aaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATAc                                                                                                          <  1:93831‑M1/37‑1 (MQ=255)
                                       caaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCt                                                                                                       <  2:117562‑M1/40‑1 (MQ=255)
                                        aaaGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCtt                                                                                                      >  2:11324/1‑141 (MQ=255)
                                         aagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCttt                                                                                                     >  2:283133‑M1/100‑141 (MQ=255)
                                             gcaagggtattaataataaattatcttgaaaattttataaatgcatatataacactgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTtaata                                                                                                 >  1:28113‑M1/96‑141 (MQ=255)
                                                agggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATaaca                                                                                              >  1:34910‑M1/93‑141 (MQ=255)
                                                aCATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATaaca                                                                                              >  2:380398/1‑141 (MQ=255)
                                                 gggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATaacaa                                                                                             >  2:98541‑M1/92‑141 (MQ=255)
                                                 cATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATaacaa                                                                                             >  1:171880/1‑141 (MQ=255)
                                                  ggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATaacaac                                                                                            >  1:130338‑M1/91‑141 (MQ=255)
                                                          taataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTGATTAGAAATACCCTTTAATACCAACGATTAAgg                                                                                    <  1:20143‑M1/59‑1 (MQ=255)
                                                             ttaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGt                                                                                 >  1:307192‑M1/80‑141 (MQ=255)
                                                             taaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAGCGATTAAGGGGt                                                                                 <  1:244370‑M1/62‑1 (MQ=255)
                                                             taaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGt                                                                                 >  1:157521‑M1/80‑141 (MQ=255)
                                                               aaaaaTCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTa                                                                               <  1:330402/140‑1 (MQ=255)
                                                                aaaaTCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTAt                                                                              >  2:24427/1‑141 (MQ=255)
                                                                    ccAAAGCATTAATCGAAGTAATACAATCTAAAGACATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTAttttt                                                                          <  2:10978/140‑1 (MQ=255)
                                                                      ttgaaaattttataaatgcatatataacaatgttttgagtgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTtgt                                                                        >  2:44283‑M1/71‑141 (MQ=255)
                                                                      aaaGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTtgt                                                                        >  1:59033/1‑141 (MQ=255)
                                                                       aaGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAAGGGTTATTTTtttg                                                                       >  2:301719/1‑141 (MQ=255)
                                                                          aaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTCCATAACAACGATTAAGGGTTTATTTTTGTGGTa                                                                    >  1:200268‑M1/67‑141 (MQ=255)
                                                                          aaTTAATTGAAGTATTACAATCTAAAGACATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATACAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTa                                                                    <  1:215954/140‑1 (MQ=255)
                                                                            attttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTAtt                                                                  >  1:117562‑M1/65‑141 (MQ=255)
                                                                             ttttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTggtagga                                                                 <  2:206601‑M1/78‑4 (MQ=255)
                                                                                 ataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGaaaa                                                             >  2:377858‑M1/60‑141 (MQ=255)
                                                                                 ataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGaaaa                                                             >  2:377824‑M1/60‑141 (MQ=255)
                                                                                 ataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGaaaa                                                             <  1:362520‑M1/82‑1 (MQ=255)
                                                                                     atgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATaaa                                                         >  2:180003‑M1/56‑141 (MQ=255)
                                                                                       gcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATaaaaa                                                       <  1:345714‑M1/88‑1 (MQ=255)
                                                                                        ttACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATaaaaaa                                                      >  2:76659/1‑141 (MQ=255)
                                                                                          aCAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAgg                                                    <  1:120815/141‑1 (MQ=255)
                                                                                          aCAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCATATAACATCGTCTATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAgg                                                    <  1:167908/141‑1 (MQ=255)
                                                                                            aaTCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTGTTGTGGTATTGAAAATAAAAAAGGGc                                                  >  1:231434/1‑141 (MQ=255)
                                                                                                acaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAACGGGCACaa                                              <  1:84263‑M1/97‑1 (MQ=255)
                                                                                                acaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaa                                              >  1:102114‑M1/45‑141 (MQ=255)
                                                                                                acaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaa                                              >  2:90749‑M1/45‑141 (MQ=255)
                                                                                                 caatgtttttattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTTGTATTGAAAATAAAAAAGGGCACaaa                                             >  2:88255‑M1/44‑141 (MQ=255)
                                                                                                 caatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAAGAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaaa                                             >  1:261143‑M1/44‑141 (MQ=255)
                                                                                                 caatgttttgattgcccttgaacgtccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaaa                                             >  1:63086‑M1/44‑141 (MQ=255)
                                                                                                  aatgttttgcttgcccttgaccgtccttcataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaaaa                                            >  1:172778‑M1/43‑141 (MQ=255)
                                                                                                  aatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaaaa                                            >  1:366231‑M1/43‑141 (MQ=255)
                                                                                                     gttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAggg                                         <  1:352114‑M1/102‑1 (MQ=255)
                                                                                                      aatTCAAGACATCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCACTTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAgggg                                        <  1:197436/140‑1 (MQ=255)
                                                                                                      aaatCAAGACTTCATTAATGAAAAAGACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAgggg                                        <  1:197460/138‑1 (MQ=255)
                                                                                                       tttgattgcccttgaacttccttgataatctggctaaTTATTCCTGGGAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGc                                       <  1:13061‑M1/104‑1 (MQ=255)
                                                                                                       tttgattgcccttgaacttccttgataatctggctaaTTATTCCAGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGc                                       <  1:167862‑M1/104‑1 (MQ=255)
                                                                                                        ttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAATGGTTTATTTTTGTGGTATTGAAACAAAAAAGGTGCCCAACAGGGGCa                                      <  2:199596‑M1/105‑1 (MQ=255)
                                                                                                        ttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAGTAAAAAAGGGGACGAAAGGGGCa                                      <  1:87375‑M1/105‑1 (MQ=255)
                                                                                                         tgattgcccttgaacttccttaataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGATAATCTTGTAGAAGTTAAAAGAAAAACGAGCACAAAAGGGGcaa                                     <  1:198036‑M1/106‑2 (MQ=255)
                                                                                                           attgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGGTATTTTTGTGGTATTGAAAATAAAAAGGGGCACAAAAGGGGCAGta                                   <  2:225372‑M1/108‑1 (MQ=255)
                                                                                                            aGACTTCATGAATAAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGtat                                  <  2:191285/141‑1 (MQ=255)
                                                                                                              gcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGTGCAgtatag                                <  2:32285‑M1/111‑2 (MQ=255)
                                                                                                                   aTTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCaaa                           <  1:342632/141‑1 (MQ=255)
                                                                                                                    ttAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAAt                          >  1:366372/1‑141 (MQ=255)
                                                                                                                     tAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAAtt                         <  1:120279/141‑1 (MQ=255)
                                                                                                                        tttcttgattgtgtgggtaaTTATTCCTGATAAATAAAACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATc                      >  2:262900‑M1/21‑141 (MQ=255)
                                                                                                                         gAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGCCACAAAGGGGGCAGTCAATGCCAATTATCg                     >  1:13173/1‑141 (MQ=255)
                                                                                                                           aaaaTACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCgca                   >  1:30710/1‑139 (MQ=255)
                                                                                                                                aCAATGGTGCAGTTATTCCTGCTAAATACTACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATGTGCCAATTATCGAATTTTa              >  2:59179/1‑141 (MQ=255)
                                                                                                                                   tctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTtaaaa           <  2:351447‑M1/132‑2 (MQ=255)
                                                                                                                                   tctggctaaTTAGTCCTACTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAAc           >  2:163498‑M1/10‑141 (MQ=255)
                                                                                                                                   aTGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTaacc           >  1:322066/1‑139 (MQ=255)
                                                                                                                                     ggTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACaa         <  1:108410/141‑1 (MQ=255)
                                                                                                                                      ggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACaaa        >  2:272929‑M1/7‑141 (MQ=255)
                                                                                                                                           gTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAAt   <  1:76659/141‑1 (MQ=255)
                                                                                                                                            ttATTCCTGCTAAATAATACCAATTAAATAAAAAAACCAAATAATAACAACGATTAAGGGGTGATTTTTATGGTATTGAAAATAAAAAAGGGTACAAAATGGGCAGTATCTGCTTATTATCGAAAAAAAAAAAAAAAAATa  <  2:243064/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                            
AAGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATA  >  CP000730/895645‑895925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.