Predicted mutation
evidence seq id position mutation freq annotation gene description
JC CP000730 2,014,521:1 (GTAAA)1→2 26.4% coding (677/837 nt) USA300HOU_1865 ← teichoic acid ABC superfamily ATP binding cassette transporter, membrane protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 201451214 (0.490)5 (0.170)
+TAAAG		 5/230 NT 26.4% coding (686/837 nt) USA300HOU_1865 teichoic acid ABC superfamily ATP binding cassette transporter, membrane protein
?CP000730 2014513 = 14 (0.450)coding (685/837 nt) USA300HOU_1865 teichoic acid ABC superfamily ATP binding cassette transporter, membrane protein

CTGTACTATCATTTGAAACATCCTGTTGATTATCAGTTTGTGTCACTTTAGATGTTTTATTATAAATTGCGTGTGTCGTATACCTTGCTAATACGAAATTTACTGCAGCTATTAAACATAAGAATAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2014384‑2014512
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAGTAAAAATGATATGGAATGTTTTCCATACTTGATATACCAAATATGATAGATTGTGCTATACCATTAACAATGTAATACATTGGATTTAGCATTAGGATGTGATTGATAA  >  CP000730/2014513‑2014626
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CTGTACTATCATTTGAAACATCCTGTTGATTATCAGTTTGTGTCACTTTAGATGTTTTATTATAAATTGCGTGTGTCGTATACCTTGCTAATACGAAATTTACTGCAGCTATTAAACATAAGAATAAAATAAAGTAAAGT                                                                                                              <  2:52160/140‑1
                   ATCCTGTTGATTATCAGTTTGTGTCACTTTAGATGTTTTATTATAAATCAAATCAGACGTGAACCGTGCTAATACGAACTTAACCGCAGCTATTAAACATAAGAATAAAATAAAGTAAAGTAAAAATGATATGGAATGTT                                                                                           >  2:342512/1‑140
                                                                      GTGTGTCGTATACCTTGCTAATACGAAATTTACTGCAGCTATTAAACATAAGAATAAAATAAAGTAAAGTAAAAATGATATGGAATGTTTTCCATACTTGATATACCAAATATGAAAGATGTTGCTATACCATTAACAAT                                        >  2:74449/1‑140
                                                                                             CGAAATTTACTGCAGCTATTAAACATAAGAATAAAATAAAGTAAAGTAAAAATGATATGGAATGTTTTCCATACTTGATATACCAAATATGATAGATTGTGCTATACCATTAACAATGTAATACATTGGATTTAGCATTA                 >  2:152286/1‑140
                                                                                                            CTATTAAACATAAGAATAAAATAAAGTAAAGTAAAAATGATATGGAATGTTTTCCATACTTGATATACCAAATATGATAGATTGTGCTATACCATTAACAATGTAATACATTGGATTTAGCATTAGGATGTGATTGATAA  <  1:342512/140‑1
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CTGTACTATCATTTGAAACATCCTGTTGATTATCAGTTTGTGTCACTTTAGATGTTTTATTATAAATTGCGTGTGTCGTATACCTTGCTAATACGAAATTTACTGCAGCTATTAAACATAAGAATAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2014384‑2014512
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAGTAAAAATGATATGGAATGTTTTCCATACTTGATATACCAAATATGATAGATTGTGCTATACCATTAACAATGTAATACATTGGATTTAGCATTAGGATGTGATTGATAA  >  CP000730/2014513‑2014626

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.