New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 287057855 (0.930)4 (0.070) 4/248 NT 7.0% intergenic (‑46/+21) gidA/USA300HOU_2715 glucose inhibited division protein A/GTP‑binding protein
?CP000730 = 2870582 54 (0.960)intergenic (‑50/+17) gidA/USA300HOU_2715 glucose inhibited division protein A/GTP‑binding protein

CATTAATGTTTTAGCACCACGTCTTGCAGATGCTAAACCTGCTTCTACACCTGCATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2870437‑2870578
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agacggAATACCGTCTTAAGAAGGCTAGTAAGATATCAAATAAGGAGGTTTATATTGTGGTTCAAGAATATGATGTAATCGTTATAGGTGCGGGACATGCAGGTGTAGAAGCAGGTTTAGCATCTGCAAGACGTGGTGCTAAA  <  CP000730/2870582‑2870446
                                                                                                                                                                                                                                                                                       
CATTAATGTTTTAGCACCACGTCTTGCAGATGCTAAACCTGCTTCTACACCTGCATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACG                                                                                                                                            <  2:568849/141‑1
 ATTAATGTTTTAGCACCACGTCTTGCAGATGCTAAACCTGCTTCTACCCCTGCATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGG                                                                                                                                           <  1:552411/141‑1
 ATTAATGTTTTAGCACCACGTCTTGCAGATGCTAAACCTGCTTCTACACCTGCATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGG                                                                                                                                           <  1:598862/141‑1
      TGTTTTAGCACCACGTCTTGCAGATGCTAAACCTGCTTCTACACCTGCATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGAATAC                                                                                                                                      <  2:608733/141‑1
                                                      ATGTCCCGCACCTATAACGATTACATCATATTCTCGAACCACAATATAAACCTCCTACTTTGATCTCTTACTATCCTTCTTAAGACGGAATTCCGTCTTAAGAAGGCTAGTAGGAAATCAAACAAAGAGGTTTAAACTGTG                                                                                      >  1:613301/1‑141
                                                               ACCTATAACGATTACATCATATTCTTGGACCCCAATATAAACCTCCTTATTTGATATCTTACTAGACTTCTTAATCCGGAATACCGTCTTAAGAAGGATAGTAGGTTATCACATAAGGAGGATTATAACGTGGTTCAACAA                                                                             >  2:216942/1‑141
                                                               ACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTTAAGAAGTCTAGTAAGATATCAAATACGGAGGTTTAGATTATGGTTCAAGAA                                                                             >  1:551414/1‑141
                                                                                             CACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTTAAGAAGGCTAGTAAGATATCAAATAAGGAGGTTTATATTGTGGTTCAAGAATATGATGTAATCGTTATAGGTGCGGGACAT                                               <  2:613301/141‑1
                                                                                                                                   gaacatGACGGAATACCGTCTGAAGAAGGCTAGTAAGATATCAAATAAGGAGGGTTATATTGTGGTTCAAGAATATGATGTAATCGTTATAGGTGCGGGACATGCAGGTGTAGAAGCAGGTTTAGCATCTGCAAGACGTGG         <  1:266363/135‑1
                                                                                                                                          cCGGAATACCGTCTTAAGAAGGCTAGTAAGATATCAAATAAGGAGGTTTATATTGTGGTTCAAGAATATGATGTAATCGTTATAGGTGCGGGACATGCAGGTGTAGAAGCAGGTTTAGCATCTGCAAGACGTGGTGCTAAA  <  1:390895/140‑1
                                                                                                                                          ACGGAATACCGTCTTAAGAAGGCTAGTAAGATATCAAATAAGGAGGTTTATATTGTGGTTCAAGAATATGATGTAATCGTTATAGGTGCGGGACATGCAGGTGTAGAAGCAGGTTTAGCATCTGCAAGACGTGGTGCTAAA  <  1:10587/141‑1
                                                                                                                                                                                                                                                                                       
CATTAATGTTTTAGCACCACGTCTTGCAGATGCTAAACCTGCTTCTACACCTGCATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2870437‑2870578
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agacggAATACCGTCTTAAGAAGGCTAGTAAGATATCAAATAAGGAGGTTTATATTGTGGTTCAAGAATATGATGTAATCGTTATAGGTGCGGGACATGCAGGTGTAGAAGCAGGTTTAGCATCTGCAAGACGTGGTGCTAAA  <  CP000730/2870582‑2870446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.