| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP000730 | 1,747,382 | (TAC)3→2 | 96.3% | coding (2065‑2067/2280 nt) | secDF ← | RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1747377 = | 1 (0.020) | 25 (0.450) | 21/244 | NT | 96.3% | coding (2072/2280 nt) | secDF | RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter |
| ? | CP000730 | = 1747373 | 1 (0.020) | coding (2076/2280 nt) | secDF | RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter | |||||
TTTCAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAACTACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTGTAAGTTTTCACGTACACGGTCA > CP000730/1747238‑1747511 | tttCAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactac < 1:446500‑M2/141‑6 (MQ=255) ttCAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactact > 1:285524‑M2/1‑135 (MQ=255) ttaaccgtcGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAATAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactacta < 2:363825/133‑1 (MQ=255) aacttatcttttttcattattcCCCCTAGCGGACCGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactaca > 1:277501‑M2/9‑132 (MQ=255) tttatgtttttTTATTATTCCACATAGCGGAACGGCAATGAAGATTGAAGAGAATACATCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaat > 1:201329‑M2/6‑130 (MQ=255) tttCATTTTTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaa > 1:113176‑M2/1‑121 (MQ=255) tCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtatt < 2:172928‑M2/141‑30 (MQ=255) ctatgcggaACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaatt > 1:596813‑M2/5‑108 (MQ=255) aTAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGCATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattg < 2:516587‑M2/141‑35 (MQ=255) tAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattga > 2:200453‑M2/1‑106 (MQ=255) gaggaaCGGAAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGACACAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATCGTATAGCAactactacaataaacgtagatactgttataattgacc < 2:182829‑M2/139‑38 (MQ=255) cGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacg > 2:3912‑M2/1‑103 (MQ=255) aaGATTGAAGAGAATCCACCAGAACTCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgt > 1:279569‑M2/1‑90 (MQ=255) aaGATTGAAGAGAATACACCAGAAATCTATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgt > 1:670412‑M2/1‑90 (MQ=255) aTTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtcta < 1:111405‑M2/141‑55 (MQ=255) agagATTACACCAGACATCTATCCGATAAATGGTGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattga > 1:94517‑M2/1‑82 (MQ=255) gagaATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctatttgat < 2:334448‑M2/141‑61 (MQ=255) gagaATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgat > 2:551712‑M2/1‑81 (MQ=255) tatcaattcGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatc > 1:148472‑M2/2‑67 (MQ=255) aaccCGATAAATGATGCTAAGGTAAAGTGGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatca > 2:612823‑M2/1‑63 (MQ=255) ccGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcaatt < 2:205768‑M2/141‑82 (MQ=255) taaagtaaagTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcaatttgttctgttgtcgt > 1:36264‑M2/1‑46 (MQ=255) caaagtaaagttGAATATAGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcaatttgttctgttgtcgt > 2:243787‑M2/2‑46 (MQ=255) ttaatattctagtggCACCGAAGAATAGTATAGCAACTACTACTACAATAACTGTTAATTCTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACtt < 1:99150/127‑1 (MQ=255) aaTATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattagttgaacgtgtcattgtctgtctaattgatctattaacgatatcatcactttgttctgttgtcgtaatcactttaacc < 2:74348‑M2/141‑109 (MQ=255) cGTAGGAGCACCGAACAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcaatttgttctgttgtcgtaatcactttaaccttttg > 1:183161‑M2/1‑28 (MQ=255) gTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcaatttgttctgttgtcgtaatcactttaaccttttgt > 2:81061‑M2/1‑27 (MQ=255) aCCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcaatttgttctgttgttgtaatcactttaaacttttgttagttttc < 2:279092‑M2/141‑123 (MQ=255) aCCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcaatttgttctgttgtcgtaatcactttaaccttttgtaagttttc < 2:690046‑M2/141‑123 (MQ=255) cGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcaatttgttctgttgtcgtaatcactttaaccttttgtaagttttcac > 2:521739‑M2/1‑17 (MQ=255) cGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcaatttgttctgttgtcgtaatcactttaaccttttgtaagttttcac < 1:485656‑M2/141‑125 (MQ=255) taGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcaatttgttctgttgtcgtaatcactttaaccttttgtaagttttcacgtacacggtcaa < 1:626020‑M2/141‑137 (MQ=255) gCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcaatttgttctgttgtcgtaatcactttaaccttttgtaagttttcacttacacggtcaaac < 1:600114‑M2/141‑139 (MQ=255) | TTTCAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAACTACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTGTAAGTTTTCACGTACACGGTCA > CP000730/1747238‑1747511 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |