| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2085296 = | 40 (1.200) | 7 (0.240) | 6/232 | NT | 17.6% | intergenic (‑558/‑400) | mapW2/USA300HOU_1944 | cell surface protein MapW2/hypothetical protein |
| ? | CP000730 | = 2128343 | 30 (1.010) | intergenic (+57/+1062) | int/USA300HOU_2011 | bacteriophage integrase/possible leukocidin subunit | |||||
ACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGA > CP000730/2128206‑2128482 | aCATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgt < 1:319185‑M2/141‑4 (MQ=255)aCATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgt < 2:184800‑M2/141‑4 (MQ=255)aCATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTATCTAtgt < 1:304834‑M2/141‑4 (MQ=255)aCATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTATTGTTACAAGGTGTCTAtgt < 1:149958‑M2/141‑4 (MQ=255) cATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgta < 1:248249‑M2/141‑5 (MQ=255) aTCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtat < 1:267253‑M2/141‑6 (MQ=255) gtgtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAACCCCAATAAATACTGTTGTTACAAGGTGTCTAtatatccaa < 2:200771‑M2/141‑10 (MQ=255) ttCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactgg < 1:141066‑M2/141‑15 (MQ=255) tcATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACTAGGTTTCTATGTATCCAAACTggggg < 2:247474/141‑1 (MQ=255) tGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAata < 1:20966/141‑1 (MQ=255) aagaaAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAAcg < 2:66168/141‑1 (MQ=255) gaaAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAAcgcg < 2:186329/141‑1 (MQ=255) tttAATGAAGAGGACAAAAAAACAACTATCATTATAGAAATGATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAtt < 1:171200/141‑1 (MQ=255) ttAATGAAGAGGACAAAAAAACAACTACAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACGGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAttt < 1:34517/141‑1 (MQ=255) aaGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCgg > 1:44943/1‑141 (MQ=255) gagGACAAAAAAACCACTCAAATTGGATAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattca < 1:293686‑M2/141‑46 (MQ=255) gagGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattca > 2:248994‑M2/1‑96 (MQ=255) aaaaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCTATTAGGTACTCCAAACCCAATAAATAATGTTGGTACACGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagta > 1:393166‑M2/1‑89 (MQ=255) aaaaaCAACTAAAATGTTAGAAAGTATGTAATGTAGGGACCCATTAGGGACTCCAAGCCCAATAAATACTGTTGTTACAAGGCTTCTATGTATCCAAACTGGGGGTAATATAAACTCGCTGATTTGATCGGACAAtcttct < 1:200771/141‑1 (MQ=255) aaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTta < 2:341638/141‑1 (MQ=255) acaacTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTtata > 1:3012/1‑141 (MQ=255) acaacTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTtata < 2:211638/141‑1 (MQ=255) aacTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATAtt > 2:53917/1‑141 (MQ=255) aacTAAAAATTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTTACCAAACTGGGGGCCATATAAACGCGCTGATTTAATCGGACAATCTTCTTATAtt > 2:294162/1‑141 (MQ=255) acTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAACCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCGAAAATGGGCGCTATATATACGCGCTGAGTTCATCGGCCAATCTCGTTATATTa > 1:350890/1‑141 (MQ=255) acTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAACCTTCTTACATTa > 2:79944/1‑141 (MQ=255) acTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACGGGGGGCAATATAAACGCGCTGATTTGATGGGAGAATATTGTTATAGTa > 1:61543/1‑141 (MQ=255) gAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAatgatg < 2:44943/141‑1 (MQ=255) aaGTATGTAATGTAGGAACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAGGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTc < 1:311771/141‑1 (MQ=255) gTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGt < 1:326651/141‑1 (MQ=255) aaTTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTCACAAGGTTTCTATGTATCCAAACTGGGGGCCATATAAACGCGCTGATTTAATCGGACAATCTTGTTATATTAAAAATAATTATGTCGTaaaagt > 2:253968/1‑137 (MQ=255) gggACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGa > 2:371381/1‑141 (MQ=255) ttAGGGACTCCAAACCCAGTAAATACTGTTGTTACAAGGTTTCTATGTATCCACACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGACGTAATATTCAATGAAGCATTTg > 2:61154/1‑141 (MQ=255) aGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGAt > 1:116463/1‑141 (MQ=255) cTCCAAACCCAATAAATCCGGTCGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATgg < 1:288641/141‑1 (MQ=255) cTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATTATGTCGTAATATTCAATGAAGCATTTGATAATgg < 1:191938/141‑1 (MQ=255) cTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATgg < 1:117643/141‑1 (MQ=255) cAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGc < 2:248249/141‑1 (MQ=255) caaatacTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaa > 2:231909‑M2/2‑26 (MQ=255) aataCTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattaccactaatacttcacctacaacaacctt > 2:233200‑M2/1‑24 (MQ=255) aataCTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacgtatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattataactaatacctcatcttaaataaaatt > 2:233067‑M2/1‑24 (MQ=255) aataCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAat < 2:304834/141‑1 (MQ=255) tgttACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGt < 1:122206/141‑1 (MQ=255) gttACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagtgact < 2:212634‑M2/141‑127 (MQ=255) tACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACCAATTATTAAGTAAt > 2:52187/1‑141 (MQ=255) tACAAGGTTTCTACGTATCAAAACTGGGGGCAATATAAACGCGCTAATTTAAAAAGAAAAAAAACTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGAATTTGATAATGGTGCATCAGATAACTTATTaaaaaat < 2:350890/141‑6 (MQ=255) tATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGa > 1:150997/1‑141 (MQ=255) | ACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGA > CP000730/2128206‑2128482 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |