New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2085296 =	50 (0.650)	19 (0.280)	14/232	NT	25.9%	intergenic (‑558/‑400)	mapW2/USA300HOU_1944	cell surface protein MapW2/hypothetical protein
	?	CP000730	= 2128343	64 (0.940)					intergenic (+57/+1062)	int/USA300HOU_2011	bacteriophage integrase/possible leukocidin subunit

AAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTTA  >  CP000730/2085157‑2085435                                                                                                                                            |                                                                                                                                            tacatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTg                                                                                                                                            <  2:520774‑M1/2‑1 (MQ=255)  acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGt                                                                                                                                           >  2:105472‑M1/139‑141 (MQ=255)  aaaaaGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGt                                                                                                                                           >  2:17037/1‑141 (MQ=255)   catccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTa                                                                                                                                          <  1:502050‑M1/4‑1 (MQ=255)   aaaaGTTGCAGTACCTGCATTAGCAAATTTCTTATGACTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGCTACGAAGTTAGTTCGTCAGAACGTTTATATGTTATCGACCGTTTTGTa                                                                                                                                          <  2:390850/141‑1 (MQ=255)    atccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTAt                                                                                                                                         >  1:284423‑M1/137‑141 (MQ=255)    atcagtgtatcttcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaacaaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTAt                                                                                                                                         >  1:509825‑M1/137‑141 (MQ=255)    aaaGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTAt                                                                                                                                         <  1:635816/141‑1 (MQ=255)     tccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattacggactccaaacccaataaatactgttgttacaaggtttctaTGTATc                                                                                                                                        <  1:518982‑M1/6‑1 (MQ=255)       gTTGCACCACCTGAATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCa                                                                                                                                      <  1:113268/141‑1 (MQ=255)        ttGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGATTGTTGAGTTTGCACCGTTTTGTATCCaa                                                                                                                                     >  2:916963/1‑141 (MQ=255)        gtgtattcttatttgttagaagaaaaagttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCaa                                                                                                                                     >  2:334620‑M1/133‑141 (MQ=255)         tgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactcccaacccaataaatactgttgttacaaggtttctaTGTATCCaaa                                                                                                                                    <  1:144167‑M1/10‑1 (MQ=255)         tGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCaaa                                                                                                                                    <  1:304288/141‑1 (MQ=255)           tattctcatttgttagaagaaaaatttaatgaagatgacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACt                                                                                                                                  >  1:47812‑M1/130‑141 (MQ=255)           tattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACt                                                                                                                                  <  1:878085‑M1/12‑1 (MQ=255)            attctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTg                                                                                                                                 <  2:360403‑M1/13‑1 (MQ=255)              tctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGga                                                                                                                               >  1:760396‑M1/127‑141 (MQ=255)                               aaaatttaatgaagaggacaaaaagacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAAt                                                                                                              <  1:664869‑M1/32‑1 (MQ=255)                                  ttattaGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTAc                                                                                                           >  1:244270/1‑141 (MQ=255)                                   tttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAAttaat                                                                                                          <  1:288475‑M1/36‑3 (MQ=255)                                     ttaGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTa                                                                                                        <  2:437965/141‑1 (MQ=255)                                     tcaGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTa                                                                                                        <  2:605778/139‑1 (MQ=255)                                       atgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATc                                                                                                      <  1:578754‑M1/40‑1 (MQ=255)                                           ggTGCACTTACTGATAATACTGCCAAAGACGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCGAAACTGGAGACTTTTAACATAAAATTACTTATCATTc                                                                                                  >  1:593661/1‑141 (MQ=255)                                             tGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaa                                                                                                <  1:378779/141‑1 (MQ=255)                                             tGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaa                                                                                                >  2:621387/1‑141 (MQ=255)                                                aCTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaaaa                                                                                             >  1:802262/1‑141 (MQ=255)                                                 cTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaaagt                                                                                            >  1:202915/1‑139 (MQ=255)                                                 attACTGTGAATAGTGCGAAAGGCGGATCATAGAAGGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAg                                                                                            <  2:34317/140‑1 (MQ=255)                                                  tttatttaaatgtggCCAAAGCCGAATCTAAGAAAGATGATACTGATTGGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGt                                                                                           <  2:185244/127‑1 (MQ=255)                                                       aacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaaccgaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAAc                                                                                      <  2:327748‑M1/56‑1 (MQ=255)                                                        aCAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACa                                                                                     >  1:778644/1‑141 (MQ=255)                                                          aaTAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGc                                                                                   >  2:261838/1‑141 (MQ=255)                                                           actaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCCTTCAAAAGGTAAAACAGCa                                                                                  <  1:801024‑M1/60‑1 (MQ=255)                                                           actaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCa                                                                                  <  1:890694‑M1/60‑1 (MQ=255)                                                              gTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataa                                                                               <  2:421042/141‑1 (MQ=255)                                                               tGCCAAATCCAAATCTAAGAAAGATTATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACCTATCATTCAAAAAGTAAAACAGCataat                                                                              <  2:411708/141‑1 (MQ=255)                                                               tGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataat                                                                              <  2:467912/141‑1 (MQ=255)                                                               tGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataat                                                                              <  2:387419/141‑1 (MQ=255)                                                               ggCCAAAGCCGAATCGAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataat                                                                              <  2:157338/140‑1 (MQ=255)                                                                 attttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAatat                                                                            >  1:483199‑M1/76‑141 (MQ=255)                                                                  aaaaGCCGAATCTAAGAAAGATTATTCTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTACCATAAAAGTACTTATCATTCAAAAAGTAAAACAGCATAATATc                                                                           <  2:609496/140‑1 (MQ=255)                                                                   tttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCTTAATATCa                                                                          <  1:454777‑M1/68‑1 (MQ=255)                                                                    aaGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCaa                                                                         <  1:13325/141‑1 (MQ=255)                                                                       ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt                                                                      <  1:159358/141‑1 (MQ=255)                                                                        aaagtatgtaatttagggaccccttagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATATAATTACTTATCATTCAAATAGTAACACAGGATAATATCAAGGtt                                                                     >  1:499180‑M1/69‑141 (MQ=255)                                                                        aaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGtt                                                                     >  2:779173‑M1/69‑141 (MQ=255)                                                                        aaagtatgtaattgagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGtt                                                                     >  1:876167‑M1/69‑141 (MQ=255)                                                                            acTAAAAAAGATGATATTGATTTGTAGTTATTTAGTCATAACGTTTATATGTTATCGACCGTTTTCTATCCAAACTGGAGACTTTTAACATAAAATTAAAAAAAAAAAAAAAAGTAAAACAGCATAATATCAAGGTTtata                                                                 <  2:577334/140‑1 (MQ=255)                                                                                 gaaaaaTGATATTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACGTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACttt                                                            <  2:71318/141‑1 (MQ=255)                                                                                  aaagaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTtta                                                           >  1:476253/1‑141 (MQ=255)                                                                                  aaagaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTtta                                                           <  2:487631/141‑1 (MQ=255)                                                                                   aagaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttat                                                          <  2:593661/141‑1 (MQ=255)                                                                                       tgatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcatt                                                      >  1:510070/1‑141 (MQ=255)                                                                                        gatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcatta                                                     <  1:840317/141‑1 (MQ=255)                                                                                         atACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattat                                                    >  2:175454/1‑141 (MQ=255)                                                                                         atACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattat                                                    >  2:537300/1‑141 (MQ=255)                                                                                          tACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGGCCGTTTTGCACCCTTACTGGAGACTTCTTACAGAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATTAAGGTTTATAACTttatcattatc                                                   >  1:213905/1‑141 (MQ=255)                                                                                           aCTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattatca                                                  >  1:352606/1‑141 (MQ=255)                                                                                            ccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTCTCAGAAAAATACTTATCCATCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaa                                                 >  1:435794‑M1/49‑141 (MQ=255)                                                                                            ccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaa                                                 >  2:790044‑M1/49‑141 (MQ=255)                                                                                               ttagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaataa                                              >  1:29479‑M1/46‑141 (MQ=255)                                                                                                  tGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATAc                                           <  1:269527/141‑1 (MQ=255)                                                                                                   gAAGTTAGTTCGACATCACCTTTATCTGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTACAACTTTATCATTATCAATAAGAcc                                          <  1:580165/141‑1 (MQ=255)                                                                                                      gttagttaGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCa                                       >  2:604095/1‑141 (MQ=255)                                                                                                      gttagttaGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCa                                       >  1:308/1‑141 (MQ=255)                                                                                                        tagttagtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCata                                     >  2:684986/1‑141 (MQ=255)                                                                                                           aacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataa                                  <  1:313327‑M1/108‑1 (MQ=255)                                                                                                           aacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATAAATAATACCTCATataa                                  <  2:202021‑M1/108‑1 (MQ=255)                                                                                                            tagtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaa                                 <  2:89378/141‑1 (MQ=255)                                                                                                            tagtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaa                                 <  2:100061/141‑1 (MQ=255)                                                                                                             agtGATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaaa                                <  1:230614/141‑1 (MQ=255)                                                                                                               caaaaaataatgttgttacaagatttctaTGTATCAAAACTGGAGACTTTCAACATAAAATTAAAAAAAAAAAAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaaata                              >  2:403199‑M1/30‑141 (MQ=255)                                                                                                                  taaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATAtaaaataaaa                           <  2:669914‑M1/115‑1 (MQ=255)                                                                                                                    aCGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAtt                         <  1:878907/141‑1 (MQ=255)                                                                                                                        ttATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttag                     <  2:22774/141‑1 (MQ=255)                                                                                                                        ttATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATAATTATCAATAATACCTCATATAAAATAAAAttttag                     <  2:778644/141‑1 (MQ=255)                                                                                                                        ttAGATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttag                     <  2:540025/141‑1 (MQ=255)                                                                                                                             tGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggact                <  1:790287/141‑1 (MQ=255)                                                                                                                             tGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggact                <  1:809631/141‑1 (MQ=255)                                                                                                                                 aTCGGCCGTTTTGTATTCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggacttttt            <  2:837339/141‑1 (MQ=255)                                                                                                                                   aggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttaggaactttttag          <  2:563654‑M1/132‑1 (MQ=255)                                                                                                                                      ccGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggga       >  1:60231/1‑141 (MQ=255)                                                                                                                                       ttctaTGTATCCAAACTTGAGACTTTTTTCCGATAATTACTTATCATTCTAAGAGTAAAACAGCATAATATCTAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagggac      >  2:829045‑M1/6‑141 (MQ=255)                                                                                                                                       cGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagggac      >  2:901024/1‑141 (MQ=255)                                                                                                                                        gTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagggact     >  1:747277/1‑141 (MQ=255)                                                                                                                                         ttttGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCACAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATtttacggactttttagggactt    >  2:454601/1‑141 (MQ=255)                                                                                                                                         ttttGTATCCAAACTGGAGACTTTGAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATtttagggactttttagggactt    >  1:582733/1‑141 (MQ=255)                                                                                                                                           ttGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACttta  <  2:110505/141‑1 (MQ=255)                                                                                                                                           aTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACttta  >  2:894915‑M1/2‑141 (MQ=255)                                                                                                                                            |                                                                                                                                            AAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTTA  >  CP000730/2085157‑2085435

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.