New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2085296 =	50 (0.650)	19 (0.280)	14/232	NT	25.9%	intergenic (‑558/‑400)	mapW2/USA300HOU_1944	cell surface protein MapW2/hypothetical protein
	?	CP000730	= 2128343	64 (0.940)					intergenic (+57/+1062)	int/USA300HOU_2011	bacteriophage integrase/possible leukocidin subunit

ACTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGAA  >  CP000730/2128203‑2128483                                                                                                                                             |                                                                                                                                             aCTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTa                                                                                                                                              >  1:101849/1‑141 (MQ=255)   tACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtg                                                                                                                                            <  2:520774‑M2/141‑3 (MQ=255)    aCATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgt                                                                                                                                           >  2:105472‑M2/1‑138 (MQ=255)     cATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgta                                                                                                                                          <  1:502050‑M2/141‑5 (MQ=255)      aTCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtat                                                                                                                                         >  1:284423‑M2/1‑136 (MQ=255)      aTCAGTGTATCTTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACAAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtat                                                                                                                                         >  1:509825‑M2/1‑136 (MQ=255)       tCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTACGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatc                                                                                                                                        <  1:518982‑M2/141‑7 (MQ=255)          gtgtATTCTTATTTGTTAGAAGAAAAAGTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaa                                                                                                                                     >  2:334620‑M2/1‑132 (MQ=255)           tgtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCCAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaa                                                                                                                                    <  1:144167‑M2/141‑11 (MQ=255)             tATTCTCATTTGTTAGAAGAAAAATTTAATGAAGATGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaact                                                                                                                                  >  1:47812‑M2/1‑129 (MQ=255)             tATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaact                                                                                                                                  <  1:878085‑M2/141‑13 (MQ=255)              aTTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactg                                                                                                                                 <  2:360403‑M2/141‑14 (MQ=255)                tctcATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactgga                                                                                                                               >  1:760396‑M2/1‑126 (MQ=255)                       tGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAata                                                                                                                        <  1:888008/141‑1 (MQ=255)                           agaagaAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCCAACTGGGGGCAATATaaa                                                                                                                    >  2:710489/1‑141 (MQ=255)                           agaagaAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATaaa                                                                                                                    >  2:170770/1‑141 (MQ=255)                                 aaaaTTTAATGAAGAGGACAAAAAGACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaat                                                                                                              <  1:664869‑M2/141‑33 (MQ=255)                                 aaaaGTTAATGAAGAGCACAAAAAAACAACTAAAATTTTAGAAAATATGTAATTTAGCTACCCATTAGAGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCt                                                                                                              <  2:470670/141‑1 (MQ=255)                                    aTTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAt                                                                                                           >  1:100039/1‑141 (MQ=255)                                     tttAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattaat                                                                                                          <  1:288475‑M2/141‑37 (MQ=255)                                     tttAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAtt                                                                                                          >  1:692269/1‑141 (MQ=255)                                         aggaagaaAACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAAt                                                                                                      <  2:798713/139‑1 (MQ=255)                                         aTGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatc                                                                                                      <  1:578754‑M2/141‑41 (MQ=255)                                         aTGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAAt                                                                                                      >  1:68991/1‑141 (MQ=255)                                         aTGAAGAGCAAAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAAt                                                                                                      <  2:265155/141‑1 (MQ=255)                                              gagGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGAc                                                                                                 >  1:58470/1‑141 (MQ=255)                                              gagGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGAc                                                                                                 <  1:393789/141‑1 (MQ=255)                                              aagGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGAc                                                                                                 <  2:184663/140‑1 (MQ=255)                                                  aCAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTGCTATGTATCCAAACTCGGAGCAATATAAACGCGCTGATTTAATCGGCCAAtc                                                                                             >  2:274884/1‑141 (MQ=255)                                                    aaaaaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAAtctt                                                                                           >  1:22167/1‑141 (MQ=255)                                                     aaaaaaCAACTAAAGTTTCAGAACACATGTATTGTAGGGTCCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCACTGATGTAATGGGACAAtcttc                                                                                          >  1:906888/1‑141 (MQ=255)                                                     aaaaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAAtcttc                                                                                          >  1:113613/1‑141 (MQ=255)                                                      aaaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAAtcttct                                                                                         >  2:427053/1‑141 (MQ=255)                                                       aaaaCAACTAAACCTTTATAAAGTATGTAATTTAGGTATCGATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATcttctt                                                                                        <  2:621209/141‑1 (MQ=255)                                                       aaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATcttctt                                                                                        <  2:530000/141‑1 (MQ=255)                                                         aacaacTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCGAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaac                                                                                      <  2:327748‑M2/141‑57 (MQ=255)                                                           caacTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTatat                                                                                    <  1:6126/141‑1 (MQ=255)                                                            aataaaaaTTTGAGAAAGTAGTTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATAtt                                                                                   <  2:750384/137‑1 (MQ=255)                                                            aacTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATAtt                                                                                   <  2:491687/141‑1 (MQ=255)                                                             acTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatccttcaaaaggtaaaacagca                                                                                  <  1:801024‑M2/141‑61 (MQ=255)                                                             acTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagca                                                                                  <  1:890694‑M2/141‑61 (MQ=255)                                                                   aTTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatat                                                                            >  1:483199‑M2/1‑75 (MQ=255)                                                                     tttAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcttaatatca                                                                          <  1:454777‑M2/141‑69 (MQ=255)                                                                      ttAGAAAGCATGTAATGTAGGGACCCATTAGGGACTCCAAACCAAACAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAatg                                                                         <  1:98101/141‑1 (MQ=255)                                                                        aGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAatgat                                                                       >  1:581714/1‑141 (MQ=255)                                                                        aGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAatgat                                                                       >  2:240696/1‑141 (MQ=255)                                                                        aGAAAGTATGTAATTTAGGGAACCATTAGGAACTCCAAAACCAATACAGACTTTTGTTGCAAGGTTTCTATGTGTCCTGTCTGTGGTCAATATTATCGTGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAatgat                                                                       <  2:760234/141‑1 (MQ=255)                                                                         gAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAatgatg                                                                      >  1:136590/1‑141 (MQ=255)                                                                         gAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAatgatg                                                                      >  1:776506/1‑141 (MQ=255)                                                                          aaaGTATGTAATTTAGGGACCCCTTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacatataattacttatcattcaaatagtaacacaggataatatcaaggtt                                                                     >  1:499180‑M2/1‑68 (MQ=255)                                                                          aaaGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtt                                                                     >  2:779173‑M2/1‑68 (MQ=255)                                                                          aaaGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTCTATTAAAAATAATGATGt                                                                     >  2:623862/1‑141 (MQ=255)                                                                          aaaGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGt                                                                     <  2:547355/141‑1 (MQ=255)                                                                          aaaGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGt                                                                     >  2:20996/1‑141 (MQ=255)                                                                          aaaGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGt                                                                     >  2:801243/1‑141 (MQ=255)                                                                          aaaGTATGTAATTGAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtt                                                                     >  1:876167‑M2/1‑68 (MQ=255)                                                                                  tAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACAGTTGTTAGAAGGGTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGACGTAatat                                                             >  2:134834/1‑141 (MQ=255)                                                                                   aaTTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATAtt                                                            <  1:170770/141‑1 (MQ=255)                                                                                         gggACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGa                                                      >  1:376700/1‑141 (MQ=255)                                                                                          ggACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGaa                                                     >  1:207947/1‑141 (MQ=255)                                                                                          ggACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGaa                                                     >  1:207453/1‑141 (MQ=255)                                                                                              ccATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttctcagaaaaatacttatccatcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaa                                                 >  1:435794‑M2/1‑48 (MQ=255)                                                                                              ccATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaa                                                 >  2:790044‑M2/1‑48 (MQ=255)                                                                                                 ttAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataa                                              >  1:29479‑M2/1‑45 (MQ=255)                                                                                                    gggACTCCAAACCCCATAAATACTGTTGTTACAATGTTTTTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATa                                           <  2:317755/141‑1 (MQ=255)                                                                                                    gggACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATa                                           >  2:478296/1‑141 (MQ=255)                                                                                                    gggACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATATTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATa                                           <  1:603257/141‑1 (MQ=255)                                                                                                     ggACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGCAGCATTTGATaa                                          >  1:16510/1‑141 (MQ=255)                                                                                                      gACTCCAAACCTAATAAATATTGTTGTTATAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAAt                                         <  2:830865/141‑1 (MQ=255)                                                                                                      gACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAAt                                         <  1:500147/141‑1 (MQ=255)                                                                                                      gACGCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAAt                                         <  2:353274/141‑1 (MQ=255)                                                                                                        cTCCAAACCGAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACGGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATgg                                       <  1:529186/141‑1 (MQ=255)                                                                                                        cTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATgg                                       <  1:909273/141‑1 (MQ=255)                                                                                                        cTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATgg                                       >  1:574638/1‑141 (MQ=255)                                                                                                        cTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATgg                                       <  2:823773/141‑1 (MQ=255)                                                                                                        cTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATgg                                       <  1:484373/141‑1 (MQ=255)                                                                                                         tCCAAACCCAATAAATACTGTTTTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGt                                      <  2:383877/141‑1 (MQ=255)                                                                                                          ccAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTg                                     >  1:772260/1‑141 (MQ=255)                                                                                                            aaaCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCa                                   >  2:721216/1‑141 (MQ=255)                                                                                                             aaCCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataa                                  <  1:313327‑M2/141‑109 (MQ=255)                                                                                                             aaCCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattataaataatacctcatataa                                  <  2:202021‑M2/141‑109 (MQ=255)                                                                                                             aaCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATTTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGACACATTTGATCAAGATGCaa                                  >  1:46101/1‑140 (MQ=255)                                                                                                             aaCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCAt                                  <  1:575319/141‑1 (MQ=255)                                                                                                             aaCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAAGGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCAt                                  <  1:458636/141‑1 (MQ=255)                                                                                                              aCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATc                                 <  1:302805/141‑1 (MQ=255)                                                                                                                 cAAAAAATAATGTTGTTACAAGATTTCTAtgtatcaaaactggagactttcaacataaaattaaaaaaaaaaaaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaata                              >  2:403199‑M2/1‑29 (MQ=255)                                                                                                                  aataaataCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGAc                             <  1:526215/141‑1 (MQ=255)                                                                                                                    taaataCTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaa                           <  2:669914‑M2/141‑116 (MQ=255)                                                                                                                       ataCTGTTGTTACAAGGTTTCTATGTATCCAAGCTTGGGGCAATATAAACGCGCTGCTTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCATAATGTTCAATGAAGCATTTGATAATTGTGAATCAGACAAatt                        >  1:184436/1‑141 (MQ=255)                                                                                                                         aCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAattat                      <  1:288078/141‑1 (MQ=255)                                                                                                                                ttACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACACTCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGGAGCATTTGATAATGGAGCAACAGACAAAAGATTAAGTaa               >  2:730339/1‑141 (MQ=255)                                                                                                                                   cAAGGTTTCTATGTATCCGAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAAtgt            <  1:719795/141‑1 (MQ=255)                                                                                                                                   cAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAAtgt            <  2:376700/141‑1 (MQ=255)                                                                                                                                   cAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAAtgt            >  2:501137/1‑141 (MQ=255)                                                                                                                                     aGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttaggaactttttag          <  2:563654‑M2/141‑133 (MQ=255)                                                                                                                                      ggTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGaa         >  1:365061/1‑141 (MQ=255)                                                                                                                                         ttCTAtgtatccaaacttgagacttttttccgataattacttatcattctaagagtaaaacagcataatatctaggtttataactttatcattatcaataatacctcatataaaataaaattttagggactttttagggac      >  2:829045‑M2/1‑5 (MQ=255)                                                                                                                                         ttCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGaaaaa      <  2:250625/141‑1 (MQ=255)                                                                                                                                             atgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggactttttagggacttta  >  2:894915‑M2/1‑1 (MQ=255)                                                                                                                                             aTGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGaa  >  1:321375/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                             ACTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGAA  >  CP000730/2128203‑2128483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.