New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 895785 =59 (0.910)4 (0.070) 4/226 NT 7.8% coding (806/822 nt) USA300HOU_0849 ABC superfamily ATP binding cassette transporter, binding protein
?CP000730 = 909740 44 (0.780)intergenic (‑663/‑371) ear/USA300HOU_0868 Ear protein/hypothetical protein

AAGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATA  >  CP000730/895645‑895925
                                                                                                                                            |                                                                                                                                            
aaGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATGAAGATGATAAGAAAATCAAAGCATTAATTGAAGTTTTACAATCTAAAGATATTCAAGACTTCATTCATGAAAAATACAATGGTGCAGt                                                                                                                                              >  1:69270/1‑141 (MQ=255)
aaGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGGAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGt                                                                                                                                              >  1:514776/1‑141 (MQ=255)
aaGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACAAAAAAAAAGAAAAATACAATGGTGCAGt                                                                                                                                              <  2:634770/141‑1 (MQ=255)
 gttgttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaagttttataaatgcatatataacaatgttttaattgcacttgaacttccttgataatctggctaatt                                                                                                                                             <  1:657211‑M1/2‑1 (MQ=255)
 gttgttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaatt                                                                                                                                             <  1:103297‑M1/2‑1 (MQ=255)
  ttgttttcaagggcaaaaaaagggcataatttagaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaatta                                                                                                                                            <  1:565644‑M1/3‑1 (MQ=255)
   tgttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaattat                                                                                                                                           <  2:647147‑M1/4‑1 (MQ=255)
     cGAAAGATAATCCTTATGCCAACTCAAGGGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTc                                                                                                                                         <  2:752180/141‑1 (MQ=255)
      gAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTcc                                                                                                                                        >  1:216098/1‑141 (MQ=255)
        caagggcaaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTg                                                                                                                                      <  1:621441‑M1/9‑1 (MQ=255)
         caagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGc                                                                                                                                     <  1:384346‑M1/10‑1 (MQ=255)
         caagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatacatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGc                                                                                                                                     <  2:214832‑M1/10‑1 (MQ=255)
          gATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGCCATCAAGCTGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTACAGTTATTCCTGCt                                                                                                                                    >  1:312939/1‑141 (MQ=255)
          gATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCt                                                                                                                                    >  1:298194/1‑141 (MQ=255)
          aagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggcttaTTATTCCTGCt                                                                                                                                    <  2:428649‑M1/11‑1 (MQ=255)
              aTCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAaat                                                                                                                                <  2:704403/141‑1 (MQ=255)
                  ttattgaaaCTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAataata                                                                                                                            <  2:330967/135‑1 (MQ=255)
                      gCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCaa                                                                                                                        <  2:213706/141‑1 (MQ=255)
                       cAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAAt                                                                                                                       <  1:506982/141‑1 (MQ=255)
                           cTTAAGTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaa                                                                                                                   <  1:373288/141‑1 (MQ=255)
                             tAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAACTAATACAAATtaaata                                                                                                                 >  1:357137/1‑141 (MQ=255)
                             tAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaata                                                                                                                 <  2:120305/141‑1 (MQ=255)
                             tAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaata                                                                                                                 >  2:411981/1‑141 (MQ=255)
                               aTTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaataaa                                                                                                               <  1:773165/141‑1 (MQ=255)
                                ttGCTGTAAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATaaaa                                                                                                              <  1:291418/141‑1 (MQ=255)
                                 tGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTACTCCTGCTAAATAATACCAATTAAATaaaaa                                                                                                             <  1:781246/141‑1 (MQ=255)
                                 gggtGTTGAAGAAAGACATGAAGATGATAAAAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATaaaaa                                                                                                             <  2:387787/138‑1 (MQ=255)
                                     gTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATAcc                                                                                                         <  1:312455/141‑1 (MQ=255)
                                            aagGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTtaat                                                                                                  >  1:368392/1‑141 (MQ=255)
                                            aagGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTtaat                                                                                                  <  1:268876/141‑1 (MQ=255)
                                            aagGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTtaat                                                                                                  >  1:719161/1‑141 (MQ=255)
                                                 cATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATaacaa                                                                                             >  2:110577/1‑141 (MQ=255)
                                                  aTCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATaaccac                                                                                            >  2:740845/1‑141 (MQ=255)
                                                  aTCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATaacaac                                                                                            >  1:365324/1‑141 (MQ=255)
                                                    cacgaagatAAGAAAATCAAAGCCTTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGa                                                                                          <  1:467292/135‑1 (MQ=255)
                                                    cAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGa                                                                                          >  2:632249/1‑141 (MQ=255)
                                                     aaGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGAt                                                                                         >  2:692394/1‑141 (MQ=255)
                                                       gatgatAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTCATCACATCCATTa                                                                                       >  1:48505/1‑141 (MQ=255)
                                                             aaGAAAATCAAAGCATTAATTGAAGTATTACAATATAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTACGGGGt                                                                                 >  2:212078/1‑141 (MQ=255)
                                                               gAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTACTGCTAAATAATACCAACTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTa                                                                               <  2:346516/141‑1 (MQ=255)
                                                                     cAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACAATTAAGGGGTTATTTTtg                                                                         >  2:304677/1‑141 (MQ=255)
                                                                       tatggttAATTGAAGTAATACAATCTAAAGATTTTCAAGACAAAAAAAAAAAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTtgtg                                                                       <  2:194085/136‑1 (MQ=255)
                                                                       aaGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCATTTAATAACAACGATTAAGGGGTTATTTTtgtg                                                                       >  2:117554/1‑141 (MQ=255)
                                                                        aacATTAACTTAAGTATAAAAATCCAAAGATATTCAAGACTTCATTAATGAAAAATACAATAGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTgg                                                                      <  2:26486/139‑1 (MQ=255)
                                                                        aGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTgg                                                                      >  1:470883/1‑141 (MQ=255)
                                                                               aTTGAAGTATTACAATCTAAAGATATTCAAGCCTTCATAAATGAAAAATACAATGGAACCGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGaa                                                               <  2:722841/141‑1 (MQ=255)
                                                                                ttGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGaaa                                                              >  1:119264/1‑141 (MQ=255)
                                                                                    aGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATaa                                                          >  1:741728/1‑141 (MQ=255)
                                                                                            aagcTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAAAAAAAAAggga                                                  >  2:205595/4‑140 (MQ=255)
                                                                                            aaTCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGc                                                  <  1:733939/141‑1 (MQ=255)
                                                                                            aaTCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGc                                                  >  2:271558/1‑141 (MQ=255)
                                                                                            aaTCTAAAGATATTCAAGACTTCATTAATGAAAAATACAACGGTGCATTTATTCCTGCTAAATCATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGc                                                  <  1:533749/141‑1 (MQ=255)
                                                                                              tCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGcac                                                <  2:557813/141‑1 (MQ=255)
                                                                                               cTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGcaca                                               <  1:439124/141‑1 (MQ=255)
                                                                                                tAAGGATATTAAAGATCTCAGTAAGGAAAAAGACAAGGGTGCAGTTCTTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTCAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaa                                              <  2:132366/141‑1 (MQ=255)
                                                                                                 aaaGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaaa                                             >  1:476069/1‑141 (MQ=255)
                                                                                                  aaGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCGGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGGTTTGAAAATAAAAAAGGGACCaaaa                                            >  2:224926/1‑141 (MQ=255)
                                                                                                   aggtatTTATGACGTCAGTAATTGAAAATACAATGGTGAATATATTCCTTCTAAAGATTACCAAGTAAAAAAAAACACCCTTATATAACGACGATAAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCTCAAAAg                                           <  2:654093/138‑1 (MQ=255)
                                                                                                   aGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAg                                           <  1:748445/141‑1 (MQ=255)
                                                                                                   aGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAACAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAATGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAg                                           <  2:216098/141‑1 (MQ=255)
                                                                                                    gATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAgg                                          >  1:273379/1‑141 (MQ=255)
                                                                                                    gATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACAAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAgg                                          >  2:658654/1‑141 (MQ=255)
                                                                                                       tttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGc                                       <  1:641682‑M1/104‑1 (MQ=255)
                                                                                                       atTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGc                                       >  2:123364/1‑141 (MQ=255)
                                                                                                        ttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCa                                      <  1:700907‑M1/105‑1 (MQ=255)
                                                                                                         tgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGGTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAg                                     <  1:466558‑M1/106‑1 (MQ=255)
                                                                                                           aaGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGta                                   >  1:77385/1‑141 (MQ=255)
                                                                                                               cccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATg                               >  2:400446‑M1/30‑141 (MQ=255)
                                                                                                                       aTGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAAGGGCAGTATATGCAAATTAt                       >  2:308463/1‑141 (MQ=255)
                                                                                                                            aaaTACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTTTGTTTTTGTAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAAt                  >  2:61046/1‑141 (MQ=255)
                                                                                                                            aaaTACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTTTATGCAAATTATCGAAt                  >  1:688885/1‑141 (MQ=255)
                                                                                                                            aaaTACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAAt                  >  1:287870/1‑141 (MQ=255)
                                                                                                                               tACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAAtttt               >  1:23325/1‑141 (MQ=255)
                                                                                                                                aCAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTa              >  1:750545/1‑141 (MQ=255)
                                                                                                                                           gTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAACAAAGGGCACAAAAGGGGCAGTATATGCAAATTGTCGAATTTTAAACAAAAAAAt   >  1:315180/1‑141 (MQ=255)
                                                                                                                                           gTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACaacaaaa  >  2:313640/1‑140 (MQ=255)
                                                                                                                                            TTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAGATa  <  2:667789‑M1/141‑1 (MQ=255)
                                                                                                                                            TTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATa  >  1:124689‑M1/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                            
AAGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATA  >  CP000730/895645‑895925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.