New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 895785 =62 (0.680)27 (0.340) 15/226 NT 32.6% coding (806/822 nt) USA300HOU_0849 ABC superfamily ATP binding cassette transporter, binding protein
?CP000730 = 909740 58 (0.730)intergenic (‑663/‑371) ear/USA300HOU_0868 Ear protein/hypothetical protein

Only 100 of 112 total aligned reads displayed.

AAGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATA  >  CP000730/895645‑895925
                                                                                                                                            |                                                                                                                                            
ggttgttttcaaggggaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaat                                                                                                                                              >  2:393602‑M1/141‑141 (MQ=255)
ggttgttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatcgggctaat                                                                                                                                              <  2:15293‑M1/1‑1 (MQ=255)
ggttgttttcaagggcaaaaaaagggcataattctgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaat                                                                                                                                              >  2:1057843‑M1/141‑141 (MQ=255)
ggttgttatcaaggccaaaaaaagggcataattttgaaacaaagggcacgggtatgaataataaattatcttgaaaattgtataaatgcatatataacaatgttttgattgcccttgaacttccttgctaatctggctaat                                                                                                                                              <  2:367719‑M1/1‑1 (MQ=255)
ggttgctttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaat                                                                                                                                              >  2:803102‑M1/141‑141 (MQ=255)
aaGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGt                                                                                                                                              <  2:83862/141‑1 (MQ=255)
  ttgttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaactttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaatta                                                                                                                                            <  1:1042500‑M1/3‑1 (MQ=255)
     ttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTc                                                                                                                                         <  2:535290‑M1/6‑1 (MQ=255)
          gATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCt                                                                                                                                    >  1:934516/1‑141 (MQ=255)
           agggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggccaaTTATTCCTGCTa                                                                                                                                   >  1:721788‑M1/130‑141 (MQ=255)
           agggaaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTa                                                                                                                                   >  2:88505‑M1/130‑141 (MQ=255)
             aaTCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTaaa                                                                                                                                 <  1:326985/141‑1 (MQ=255)
              gcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAaat                                                                                                                                >  2:40219‑M1/127‑141 (MQ=255)
              aTCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAaat                                                                                                                                >  1:575342/1‑141 (MQ=255)
               aaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAaata                                                                                                                               >  1:987607‑M1/126‑141 (MQ=255)
               aaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAaata                                                                                                                               <  2:131152‑M1/16‑1 (MQ=255)
                ccTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAaataa                                                                                                                              >  1:389720/1‑141 (MQ=255)
                      agggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCaa                                                                                                                        <  2:12238‑M1/23‑1 (MQ=255)
                       cAAACTTAACTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAAt                                                                                                                       <  1:838832/141‑1 (MQ=255)
                        aaccTTAATTGATGTTAAAGAAGGATATGAAGAAGATAAGAAAATCAAAGCATTAATGGAAGTATTACAATCTAACGATATTTAAGACTTAATTAATGAAAAATACAATGGGGCAGTGATTACTGCATAACAATACCAGtt                                                                                                                      <  2:731411/138‑1 (MQ=255)
                           ataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatcgtgctaaTTATTCCTGCTAAATAATACCAATtaaa                                                                                                                   <  1:256899‑M1/28‑1 (MQ=255)
                              aagtgcaggtAAAGAAGGACATTAAGATGATAAGAAAAGCACAGCATTAATTGAAGTATAACAAGCTAAAGATATTTACGCCTTTTTTCAAGAAAAATACAATGGTGCAGTTATTCCTGCTAAATCATAGCATTtaaataa                                                                                                                <  2:233076/132‑1 (MQ=255)
                              aaTTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAaataaatcatattaatggc                                                                                                                >  1:441982/1‑127 (MQ=255)
                              aaTTGCTGTTAAAGAAAGTCAATAAGATGAAAAGAAAATCAAAGGATTAATTAAAATATTACCTTCTAAAGATATTCAAGACTTCATTAATGAAAAATAAAATGGTGCAGTTATTCCTGCTAAATAATAGCaataaaataa                                                                                                                <  2:389149/141‑1 (MQ=255)
                                tttgaaacaaatggcaagagtatatataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgatcttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATaaaa                                                                                                              >  2:788579‑M1/109‑141 (MQ=255)
                                  gCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATGATACTAATTAAATAAAAAt                                                                                                            <  1:607913/141‑1 (MQ=255)
                                  gCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAAt                                                                                                            <  1:381923/141‑1 (MQ=255)
                                   cTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATa                                                                                                           >  1:656779/1‑141 (MQ=255)
                                   cTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATa                                                                                                           >  2:833259/1‑141 (MQ=255)
                                           gggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATCACCTttat                                                                                                   <  1:103161‑M1/44‑2 (MQ=255)
                                           gggcaagggtatgaataataaattatcttgaaaattttataaatgcacatatccaactgttttgattgcccttgaacttccttgataatctggctaaTTATTCCCGCCAAATAATACCAATTAACTACAAATCCCCTTtaa                                                                                                   <  2:1005077‑M1/44‑1 (MQ=255)
                                           gggcaagggtatgaataataaattatcttcaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAATTACCCTTtaa                                                                                                   <  2:407744‑M1/44‑1 (MQ=255)
                                               aagggtatgaataataaattatcttgaaaattttataaatgcatatataacagtgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATaac                                                                                               <  1:211703‑M1/48‑1 (MQ=255)
                                               aagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATCCCCATTAATTAAAAATACCCTGTAATaac                                                                                               <  2:546314‑M1/48‑1 (MQ=255)
                                                    cAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACACTCTAAAGCTATTCGAGAATTCATTAATGAAAAATACAATGGTGCAGTTATTTCTGCTAAATAATACCAATTAAATAAAAATACCTTTTAATAACAACGa                                                                                          <  2:911975/141‑1 (MQ=255)
                                                    cAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGa                                                                                          >  1:200134/1‑141 (MQ=255)
                                                    cAAGATGATAAGAAAATCAAAGCAATAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATGAAATAAAAGTACCCTTTAATAACAACGa                                                                                          >  1:704246/1‑141 (MQ=255)
                                                       gatgatAAGAAAATCAACGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATCATACCAATTAAAGAAAAATCCCCATtaataaaagacatta                                                                                       >  2:183687/1‑132 (MQ=255)
                                                       gatgatAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTa                                                                                       >  1:1004341/1‑141 (MQ=255)
                                                       gatgatAAGAAAATCAAAGCATTAATTGAAGCATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTACATAATACCAATTAAATAAAAATACCCTTTAATAACAACGAATa                                                                                       >  2:285518/1‑141 (MQ=255)
                                                             aaGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGt                                                                                 <  1:69255/141‑1 (MQ=255)
                                                             aaGAAAATCAAAGCATGAATTGAAGTGTTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTACTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGt                                                                                 <  1:675035/141‑1 (MQ=255)
                                                              aGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTACGGGGtt                                                                                >  1:638282/1‑141 (MQ=255)
                                                              aGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGtt                                                                                <  2:608613/141‑1 (MQ=255)
                                                              aGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACGTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATAACAATTAAATAAAAATACTCTTTAATAACAACGAATAAgggtat                                                                                >  2:351363/1‑138 (MQ=255)
                                                              aGAAAACCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGtt                                                                                >  2:168818/1‑141 (MQ=255)
                                                                aaaaTCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGAGTAAGGGGatat                                                                              >  1:121653/1‑141 (MQ=255)
                                                                 aaaTCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATACAAATACCCTTTAATACCAACGACTGAGGGGTTAtt                                                                             >  1:866281/1‑141 (MQ=255)
                                                                   atcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctccATCTTCGCGCAAGATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTAtttt                                                                           <  1:255555‑M1/68‑1 (MQ=255)
                                                                   aTCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTAtttt                                                                           <  1:311011/141‑1 (MQ=255)
                                                                     cAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACATCGATTAAGGGGTTATTTTtg                                                                         >  1:885035/1‑141 (MQ=255)
                                                                       tgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGCgttattttgttg                                                                       <  1:641015‑M1/72‑5 (MQ=255)
                                                                        aGCATTAATTGAAGTATTATAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTATGGGGTTATTTTTGTgg                                                                      >  1:824864/1‑141 (MQ=255)
                                                                        aGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTagtag                                                                      >  2:930402/1‑139 (MQ=255)
                                                                         gCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTCAGGGGTTAttttttgtgt                                                                     >  1:1006083/1‑136 (MQ=255)
                                                                         gCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGt                                                                     <  1:563616/141‑1 (MQ=255)
                                                                         gCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTAATTAATGAAAAATACAATGGTGCAGTTATTTCTGCTAAATAATACGAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGCGTTATTTTTGTGGt                                                                     >  1:1006081/1‑141 (MQ=255)
                                                                               aTTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACAGTTAAGGGGTTATTTTTGTGGTATTCaa                                                               >  1:308716/1‑141 (MQ=255)
                                                                                    aGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATaa                                                          <  1:4475/141‑1 (MQ=255)
                                                                                        ttACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATaaaaaa                                                      >  2:540523/1‑141 (MQ=255)
                                                                                         tACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAg                                                     <  2:934516/141‑1 (MQ=255)
                                                                                          aCAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAgg                                                    >  2:725171/1‑141 (MQ=255)
                                                                                           cAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAggg                                                   <  1:542076/141‑1 (MQ=255)
                                                                                           aaaTCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAggg                                                   <  2:297609/140‑1 (MQ=255)
                                                                                               cTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGcaca                                               >  1:462155/1‑141 (MQ=255)
                                                                                               cTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGcaca                                               >  1:1067268/1‑141 (MQ=255)
                                                                                               cTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGAATTGAAAATAAAAAAGGGcaca                                               >  2:13449/1‑141 (MQ=255)
                                                                                                aaaatgttttgactgcccttgaacttccgtgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaa                                              >  2:247870‑M1/45‑141 (MQ=255)
                                                                                                  aatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaaaa                                            >  1:267032‑M1/43‑141 (MQ=255)
                                                                                                   aGATAATCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAAGTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAg                                           <  2:1070950/141‑1 (MQ=255)
                                                                                                     atatTCAAGACTTCATTAATGAAAAATACAATGGGGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAggg                                         <  1:285949/141‑1 (MQ=255)
                                                                                                          cAAGACTTCATTAATGAAAAATACAATGGTGCAGATATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGt                                    >  2:183080/1‑141 (MQ=255)
                                                                                                             gACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTTTGTTATTTATAATAAAAAAGGGCATAAAAGGGGCAGtata                                 >  2:20134/1‑141 (MQ=255)
                                                                                                              gtccttgaactcccctgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATTACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTatat                                >  2:379795‑M1/31‑141 (MQ=255)
                                                                                                              gcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTatat                                >  2:385106‑M1/31‑141 (MQ=255)
                                                                                                              gcccttgaacttccttgataatctggcaaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTatat                                >  1:230556‑M1/31‑141 (MQ=255)
                                                                                                                cctttaactgtctggataatctggccacTTAGTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACACCGATTAAGGGGTTATTCTTGTGGTATTGAAAAGAAAAAAGGGCACCAAAGGGGCAGTATATGc                              >  2:337282‑M1/29‑141 (MQ=255)
                                                                                                                  cATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAAAAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCaa                            >  2:726011/1‑141 (MQ=255)
                                                                                                                   tgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCaaa                           <  1:782082‑M1/116‑1 (MQ=255)
                                                                                                                    ttAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAAt                          <  1:836152/141‑1 (MQ=255)
                                                                                                                     tAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAAtt                         <  1:545959/141‑1 (MQ=255)
                                                                                                                      aaTGAAAAATAAAATAGTGAAGTTTTTCCTGCTAAAAAATACCAATTAAATAAAAATACCCTTAAATAACAACGATTAAGGGGTTATTTTTGTGGAAAAAAAAAAAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTa                        <  2:324074/141‑1 (MQ=255)
                                                                                                                        tGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACAGATTAAATAAAAATACCCTTTAATAACAACGTTTACGGGGTTATTTTTGTGGTATTGAAAATACATAAGGGTGCAAAGGGGGGGGTTTATGCAAGTTAtg                      >  2:181913/1‑140 (MQ=255)
                                                                                                                         gAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAAatattg                     >  2:821490/1‑139 (MQ=255)
                                                                                                                            agatccaagcgtgcaaGTATTCCTGCTAAATAATACCAAATAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAAt                  >  2:866281‑M1/17‑141 (MQ=255)
                                                                                                                            aaaTACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATACAAGAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAAt                  >  1:135529/1‑141 (MQ=255)
                                                                                                                            aaaTACAATGGTGCAGTTATGCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTGATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAAt                  >  1:674681/1‑141 (MQ=255)
                                                                                                                             tgataatctggctaaTTATTCCTGCTAAATAATACCAATTATATAAACATAACCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATTGAAtt                 <  1:757611‑M1/126‑1 (MQ=255)
                                                                                                                             tgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAGAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAAtt                 <  1:758207‑M1/126‑1 (MQ=255)
                                                                                                                             tgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAAtt                 <  2:483025‑M1/126‑1 (MQ=255)
                                                                                                                             tgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAAtt                 <  2:819493‑M1/126‑1 (MQ=255)
                                                                                                                              gataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCCCCAAAGGGGCAGTATATGCAAATTATCGAAttt                <  2:76502‑M1/127‑1 (MQ=255)
                                                                                                                                taatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGAATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTa              <  1:108960‑M1/129‑1 (MQ=255)
                                                                                                                                     ggTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACaa         >  1:340399/1‑141 (MQ=255)
                                                                                                                                         cAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACaacaaa     >  1:391692/1‑141 (MQ=255)
                                                                                                                                         cAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACaaaaaa     >  1:64061/1‑141 (MQ=255)
                                                                                                                                          aGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAATAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACaaaaaaa    >  1:1004567/1‑141 (MQ=255)
                                                                                                                                           gTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTGTCGAATTTTAAACAAAAAAAt   >  1:561160/1‑141 (MQ=255)
                                                                                                                                           aTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAAt   >  1:1048767‑M1/2‑141 (MQ=255)
                                                                                                                                            TTATTCCTGCTAAACAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTTAAAATAAAAAAGCGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAatg  <  2:756776‑M1/141‑2 (MQ=255)
                                                                                                                                            |                                                                                                                                            
AAGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATA  >  CP000730/895645‑895925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.