New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	864131 =	93 (0.900)	4 (0.040)	3/254	NT	4.1%	coding (321/459 nt)	USA300HOU_0807	hypothetical membrane protein
	?	CP000730	864198 =	94 (0.930)					coding (388/459 nt)	USA300HOU_0807	hypothetical membrane protein

TTTTCTAGCGATTAAATGTACTTTTACGTTTGATAGAAACAACAAGCATATAAATCGCTAATGCAACCGAACCTATAATAACAATTAAAATTGGCAATGTTAAGTACGCACCGTGTGCAGCTTTTATTGCTTGAATTGTGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/864273‑864131 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAATATGATATACTACTTGTCGTATATAAGGAACGGAGGACAATTTA  >  CP000730/864198‑864336                                                                                                                                                                                                                                                                                            TTTTCTAGCGATTAAATGTACTTTTACGTTTGATAGAAACAACAAGCATATAAATCGCTAATGCAACCGAACCTATAATAACAATTAAAATTGGCAATGTTAAGTACGCACCGTGTGCAGCTTTTATTGCTTGAATTGTGA                                                                                                                                               <  1:914381/141‑1                                          acatggcaATAAATCGGTCATGCAACCGAACCTATAACAACAATTAAAATTGGTAATGTTTAGTACCCACCGTGTGCAGCTTTTATTGCTTGAATTGTGATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTT                                                                                                      <  2:63638/133‑1                                          ACATGCAAATAAATCGCGAATGCAACCGAACCTATAATAACAATTAAAATTGGCAATGTTAAGTACGCACCGTGTGCAGCTATTATTGCTTGAATTGTGATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTT                                                                                                      <  2:800835/141‑1                                              GCATATAAATCGCTAATGCAACCGAACCTATAATAACAATTAAAATTGGCAATGTTAAGTACGCACCGTGTGCAGCTTTTATTGCTTGAATTGTGATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTA                                                                                                  >  1:1197976/1‑141                                                                                                                                      AATTGTGATTAAAGGTTCTGTTGCATTAGCGATTTACATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGAAAAAAAAAAAAAAAATATGATATACTACTTGTCGTATATAAGGAACGGAGG          <  2:663832/141‑1                                                                                                                                              TTATAGGTTCGGTTGCATTAGCGATCTATATGCTTGTTGTTTCTATCAATCGTAAAAGATTATTTAATCGCTCGAAAATTGATTTTAGTGATAATAATATGATATACTACTTGTCGTATATAAGGAACGGAGGAgacttga  >  2:472887/1‑134                                                                                                                                                                                                                                                                                            TTTTCTAGCGATTAAATGTACTTTTACGTTTGATAGAAACAACAAGCATATAAATCGCTAATGCAACCGAACCTATAATAACAATTAAAATTGGCAATGTTAAGTACGCACCGTGTGCAGCTTTTATTGCTTGAATTGTGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/864273‑864131 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAATATGATATACTACTTGTCGTATATAAGGAACGGAGGACAATTTA  >  CP000730/864198‑864336

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.