BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1131177 =	111 (1.080)	4 (0.040)	3/242	NT	3.7%	intergenic (+141/‑1087)	USA300HOU_1058/USA300HOU_1059	hypothetical protein/hypothetical protein
*	?	CP000730	1131203 =	103 (1.070)	4 (0.040)	3/242	NT	3.7%	intergenic (+167/‑1061)	USA300HOU_1058/USA300HOU_1059	hypothetical protein/hypothetical protein

Only 100 of 135 total aligned reads displayed.

TATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGTACCTACCACCTAA  >  CP000730/1131063‑1131341

tATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACt                                                                                                                                             <  2:570985/141‑1 (MQ=255)

 tttGAAACCACTAACTAGCATCTGACTCGATGTTTGTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATCCTa                                                                                                                                            <  2:15417/140‑1 (MQ=255)

     aaaCCATTAACTAGCATCTGTCTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTGGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTa                                                                                                                                        <  1:276674/141‑1 (MQ=255)

      aaCCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTAc                                                                                                                                       >  2:795054/1‑141 (MQ=255)

       aCCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACg                                                                                                                                      <  1:466968/141‑1 (MQ=255)

           ctaactaGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCat                                                                                                                                  >  1:148606/1‑141 (MQ=255)

              actaGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCataat                                                                                                                               >  1:1024671/1‑141 (MQ=255)

              actaGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCataat                                                                                                                               >  1:136184/1‑141 (MQ=255)

               ctaGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCataata                                                                                                                              <  1:714506/141‑1 (MQ=255)

                taGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAg                                                                                                                             <  1:315458/141‑1 (MQ=255)

                  gCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTTTTTTATTTCATTCATCA‑‑GATTTATACTATTTTCTCCATAATTGct                                                                                                                           >  2:392427/1‑140 (MQ=255)

                  aatgcctactcattttaaaggcattgatttgacttcatctcgttttatcaaatggttaaatgatatgaatatcattccaggctattatggcgtaaatagtataaatcattcatcagatttatacTATTTACGCCATAATAg                                                                                                                             <  1:195532‑M2/17‑1 (MQ=255)

                    ttCTGACTCCATTTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTg                                                                                                                         <  2:831633/140‑1 (MQ=255)

                     tCTGGCTTGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAACCTgg                                                                                                                        <  2:599807/141‑1 (MQ=255)

                     tCTGATTCGCTGTTTTTATTTATTCGGGATTGTCTGTTTGAATTGGTGGGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCAGCTTTGTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTgg                                                                                                                        <  1:693361/141‑1 (MQ=255)

                     tCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTgg                                                                                                                        <  1:822451/141‑1 (MQ=255)

                     tCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTgg                                                                                                                        <  2:889967/141‑1 (MQ=255)

                     tCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCAATCTGTCACAATCGTGTGTGCTCCTTTTTGTTATAAATCCTTCATCA‑‑GATTTATACTATTTAAGCCATACTAGCCTgg                                                                                                                        >  2:824756/1‑141 (MQ=255)

                       tGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTCGGTATAAATCATTCATCA‑‑GATTTATACTATTGACGCCATAATAGCCTGGaa                                                                                                                      <  2:850979/141‑1 (MQ=255)

                        gtcTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAAt                                                                                                                     <  2:521366/139‑1 (MQ=255)

                            cGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGata                                                                                                                 >  1:986340/1‑141 (MQ=255)

                            cGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGata                                                                                                                 >  1:389208/1‑141 (MQ=255)

                             gATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGatat                                                                                                                >  2:986445/1‑141 (MQ=255)

                                gTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCa                                                                                                             <  2:736540/141‑1 (MQ=255)

                                 tttttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCat                                                                                                            <  1:955462/141‑1 (MQ=255)

                                    ttatttatTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATc                                                                                                         >  1:1039258/1‑141 (MQ=255)

                                    ttatttatTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGAAATGATATTCATATc                                                                                                         >  2:967807/1‑141 (MQ=255)

                                     tatttattCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCa                                                                                                        <  1:930940/141‑1 (MQ=255)

                                      atttattCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCAt                                                                                                       >  1:203282/1‑141 (MQ=255)

                                      atttataCGGGATTGTTTGTTTGAAGTGTTGTGCTAAATCTGGTCGGTCTGTCACAATCGTGTGTGCACCTTTTTGATATGAATCCTTCATCA‑‑GATTTATACTATTTACGTCATAATTGCCTGTAATGTTATTCAtattat                                                                                                       >  2:231848/1‑141 (MQ=255)

                                            tccggATTCTTTCTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAAcc                                                                                                 <  2:187780/138‑1 (MQ=255)

                                                gATTGTTTGTTTGAATTGTTGTGCTAAATCGGGTCGATCTGTCACAAGCGTGTGTGCACCTTTTTGGTATAAATCATTCATCC‑‑GATTTATACCATTTACGCCATATTAGCCTGGAATGATATTCATATCATTTAACCAtat                                                                                             <  2:1038004/141‑3 (MQ=255)

                                                   tgtttgttTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGAt                                                                                          <  1:1147461/141‑1 (MQ=255)

                                                   tgtttgttTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAAAGATATGAATAACGTTTCAGCATTTGAt                                                                                          >  2:478815/1‑141 (MQ=255)

                                                    gtttgtttGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATa                                                                                         <  1:368239/141‑1 (MQ=255)

                                                    gtttgtttGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCAATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATa                                                                                         >  2:343864/1‑141 (MQ=255)

                                                    gtttgtttGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACACCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATa                                                                                         >  1:1063883/1‑141 (MQ=255)

                                                         tttgAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACg                                                                                    >  2:800986/1‑141 (MQ=255)

                                                         tcgttttatcaaatggttaaatgatatgaatatcattccaggctattatggcgtaaatagtataaatcattcatcagatttatacTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATaaaa                                                                                      <  1:1075191‑M2/56‑1 (MQ=255)

                                                         tcgttttatcaaatgattaaatgatatgaatatcattccaggctattatggcgtaaatagtataaatcattcatcagatttatacTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATaaaa                                                                                      <  1:386073‑M2/56‑1 (MQ=255)

                                                          ttttatcaaatggttaaatgatatgaatatcattccaggctattatggcgtaaataGTATAAATC‑‑TGATGAATGATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAATCATTTGATAAAACga                                                                                   <  1:386073‑M1/85‑1 (MQ=255)

                                                          ttttatcaaatggttaaatgatatgaatatcattccaggctattatggcgtaaataGTATAAATC‑‑TGATGAATGATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACga                                                                                   <  1:1075191‑M1/85‑1 (MQ=255)

                                                             aaTTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGAt                                                                                >  1:526335/1‑141 (MQ=255)

                                                              aTTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGAGATTCATATCATTTAACCATTGGATAAAACGAAAta                                                                               >  1:140435/1‑140 (MQ=255)

                                                                 gttgtGCTAAATCTGGTCGATCTGTCACGATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAg                                                                            >  1:760095/1‑141 (MQ=255)

                                                                 gttgtGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAg                                                                            <  1:602343/141‑1 (MQ=255)

                                                                 gttgtGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAg                                                                            >  2:865576/1‑141 (MQ=255)

                                                                   tgtgCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTc                                                                          <  2:136184/141‑1 (MQ=255)

                                                                    ttgCTAAATTTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCa                                                                         <  1:546447/140‑1 (MQ=255)

                                                                    ttgCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGACATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCa                                                                         <  1:1112986/140‑1 (MQ=255)

                                                                    gtgccagctCTGGTCGATCTTGCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCa                                                                         <  1:212655/133‑1 (MQ=255)

                                                                    gtgCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCa                                                                         <  1:1113546/141‑1 (MQ=255)

                                                                     tgCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCaa                                                                        >  2:1040546/1‑141 (MQ=255)

                                                                     tgCTAAATCTGGTCGATCTGTCACAATCGTGTCTGCACCTGTTGGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCaa                                                                        <  1:922026/141‑1 (MQ=255)

                                                                        tAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATc                                                                     >  1:759430/1‑141 (MQ=255)

                                                                            tCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATg                                                                 <  1:497596/141‑1 (MQ=255)

                                                                              tGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTTTTTTTTTTTATTCATCA‑‑GATTTATACTATTTACGACATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGcc                                                               >  2:447170/1‑141 (MQ=255)

                                                                              tGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGcc                                                               >  1:986492/1‑141 (MQ=255)

                                                                                gTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAATTCAAATCAATGCC‑tt                                                            >  1:515135/1‑141 (MQ=255)

                                                                                 tCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑ttt                                                           <  1:850656/141‑1 (MQ=255)

                                                                                     tCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTaaaa                                                       <  2:75163/141‑1 (MQ=255)

                                                                                      cTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTGAAAAt                                                      >  2:636309/1‑141 (MQ=255)

                                                                                         tCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACGATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAg                                                   <  1:308090/141‑1 (MQ=255)

                                                                                             aaTCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAgg                                               <  2:148606/141‑1 (MQ=255)

                                                                                              aTCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGc                                              >  1:538099/1‑141 (MQ=255)

                                                                                                cGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGAC‑TTTGAAATGAGAAGGCaa                                            >  2:624121/1‑140 (MQ=255)

                                                                                                  tgtgtgCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGACGTCAAATCAATGCC‑TTTAAAATAAGTAGGCAtgt                                          >  2:40176/1‑139 (MQ=255)

                                                                                                  tgtgtgCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCAttt                                          >  1:660051/1‑141 (MQ=255)

                                                                                                   gtgtgCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTg                                         >  1:1044975/1‑141 (MQ=255)

                                                                                                    tgtgCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTC‑AACCAAAGCCGTTTAAAATGAGTAGGCATTTgg                                        <  2:548636/141‑1 (MQ=255)

                                                                                                    ggtgCACCTGTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTgg                                        <  2:458324/140‑1 (MQ=255)

                                                                                                     gtgCTCGTTTTTCGTCTAATTCATTCAACA‑‑GAATTATGCTTTTTAGGTCATAATAGCCTGGAATGATATTCATATCATTTAAACATTTGATAAAGCGAGATGGAGTCAAATCAATGCC‑GTTAAAATGAGTAGGCATTTGGa                                       <  2:388162/141‑1 (MQ=255)

                                                                                                     gtgCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGa                                       <  2:678188/141‑1 (MQ=255)

                                                                                                      tgCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGaa                                      >  2:1121037/1‑141 (MQ=255)

                                                                                                       gCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGAAc                                     <  2:1020610/141‑1 (MQ=255)

                                                                                                         aCCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGAAGGCATTTGGAACgg                                   >  1:419604/1‑140 (MQ=255)

                                                                                                              tttGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGGGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGAACGTTtgtg                              <  2:648913/141‑1 (MQ=255)

                                                                                                                tGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGAACGTTTGTGCt                            <  1:520880/141‑1 (MQ=255)

                                                                                                                tGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGAACGTTTGTGCt                            <  2:304082/141‑1 (MQ=255)

                                                                                                                 ggTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCTTTTGGAACGTTTGTGCTa                           >  1:726753/1‑141 (MQ=255)

                                                                                                                 ggTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGAACGTTTGCGCTa                           >  2:1164994/1‑141 (MQ=255)

                                                                                                                    ATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGCAGGCATTTGGAACGTTTGTgctactg                        <  1:952454‑M1/141‑4 (MQ=255)

                                                                                                                         TCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGTAACGTTTGTGCTAAtggttgg                   <  1:874694‑M1/141‑1 (MQ=255)

                                                                                                                             tgatgaatgatttatacTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGgta                 >  2:778989‑M2/18‑141 (MQ=255)

                                                                                                                             tcatca‑‑GATTTATACTATTTCCGCCATAATAGGCTGGACTGATATTCATATCATTTAACCATTTGAGCAAACGCGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGgtagt               <  2:406887/141‑1 (MQ=255)

                                                                                                                               atca‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGtac             <  1:409595/141‑1 (MQ=255)

                                                                                                                               atca‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGtac             >  1:72163/1‑141 (MQ=255)

                                                                                                                                tca‑‑GGTTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGtacc            >  2:830589/1‑141 (MQ=255)

                                                                                                                                tca‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATTCC‑TTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGtacc            <  2:526335/141‑1 (MQ=255)

                                                                                                                                 ca‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAATTCAAATCAATGCC‑TTTAAAATGAGTATGCATTTGGAACGTTTGTGCTAATTGTTGGTAGtacct           <  2:515135/141‑1 (MQ=255)

                                                                                                                                   atgatttatacTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGtacct           <  2:195532‑M2/130‑1 (MQ=255)

                                                                                                                                     gatttatacTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGtacctac         >  1:603754‑M2/10‑141 (MQ=255)

                                                                                                                                     gatttatacTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGtacctac         >  1:603601‑M2/10‑141 (MQ=255)

                                                                                                                                     gatttatacTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGtacctac         >  1:977376‑M2/10‑141 (MQ=255)

                                                                                                                                         tatacTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGTACCTaccacc     <  1:359820‑M2/136‑1 (MQ=255)

                                                                                                                                          atacTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGTACCTACCACCt    >  1:956486‑M2/5‑141 (MQ=255)

                                                                                                                                          atacTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGAACGTTTGTGCGAATGGTTGGTAGTACCTACCACCt    <  1:769500‑M2/137‑1 (MQ=255)

                                                                                                                                           tacTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGTACCTACCACCTa   <  1:929696‑M2/138‑1 (MQ=255)

                                                                                                                                           tacTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGTACCTACCACCTa   >  2:439785‑M2/4‑141 (MQ=255)

                                                                                                                                           tacTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGTACCTACCACCTa   >  2:493299‑M2/4‑141 (MQ=255)

TATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCA‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCC‑TTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGTACCTACCACCTAA  >  CP000730/1131063‑1131341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.